Table 1.
Data Collection, Phasing, and Refinement Statistics
Se SAD | native | |
---|---|---|
data collection | ||
beamline | SSRL BL9-1 | NE-CAT (Sector 8) |
wavelength (Å) | 0.979 | 0.979 |
resolution (Å) | 30–2.7 | 30–2.3 |
no. of unique observationsa | 109776 | 108695 |
total no. of observationsa | 592029 | 773692 |
completeness (%)a | 83.0 (49.8)b | 100 (100)b |
redundancya | 5.4 (4.3)b | 7.1 (6.9)b |
I/σa | 17.3 (5.0)b | 16.5 (4.9)b |
Rsyma,c (%) | 5.9 (26.0)b | 8.9 (44.8)b |
Se sites used for phasing | 71 of 77 | |
figure of merit (after density modification) | 0.40 (0.75) | |
refinement | ||
Rwork (%)d | 20.2 | 19.8 |
Rfree (%)e | 25.2 | 24.2 |
no. of molecules in ASU | 1 | 1 |
no. of protein non-hydrogen atoms | 16076 | 15307 |
no. of non-protein atoms | 315 | 1042 |
rmsd for bond lengths (Å) | 0.033 | 0.0065 |
rmsd for bond angles (deg) | 2.55 | 1.28 |
average B value (Å2) | 36.0 | 37.7 |
Values for the Se SAD data were calculated considering I+ and I− as separate reflections.
Values in parentheses are for the highestresolution shell.
, where Ii(hkl) is the ith measured diffraction intensity and 〈I(hkl)〉 is the mean of the intensity for the Miller index (hkl).
Rfree = Rwork for a test set of reflections (5%).