Table 3.
Deoxyxylulose pathway genes in complete genomes
| Organism | Accession nos.
|
|||
|---|---|---|---|---|
| dxs* | dxr† | ygbP‡ | ygbB | |
| Bacteria | ||||
| E. coli§ | AF035440 | AB013300 | AE000358 | AE000358 |
| H. influenzae§ | U32822 | U32763 | U32750 | U32750 |
| A. aeolicus§ | AE000712 | AE000688 | AE000734 | AE000715 |
| Synechocystis sp. PCC6803¶ | D90903 | D64000 | D90914 | D90906 |
| B. subtilis‖ | D84432 | Z99112 | Z99101 | Z99101 |
| T. maritima§ | AE001815.1 | AE001754.1 | AE001792.1 | AE001738.1 |
| M. tuberculosis‖ | Z96072 | Z74024 | Z92774 | Z92774 |
| T. pallidum§ | AE001253 | AE001235 | AE001227 | AE001227 |
| H. pylori§ | AE001468 | AE000541.1 | AE001373 | AE001474 |
| C. pneumoniae§ | AE001686 | AE001617 | AE001642 | AE001639 |
| C. trachomatis§ | AE001306 | AE001281 | AE001320 | AE001317 |
| M. genitalium | — | — | — | — |
| R. powazekii | — | — | — | — |
| B. burgdorferi | — | — | — | — |
| Archaea | ||||
| P. horikoshii¶ | — | — | AE000002 | — |
| Aeropyrum pernix | — | — | — | — |
| Archeoglobus fulgidus | — | — | — | — |
| Methanobacterium thermoautotrophicum | — | — | — | — |
| Methanococcus jannaschii | — | — | — | — |
| Eukaryotes | ||||
| C. elegans | — | — | — | — |
| Saccharomyces cerevisiae | — | — | — | — |
*
Specifying 1-deoxyxylulose-5-phosphate synthase
†
Specifying 1-deoxyxylulose-5-phosphate reductoisomerase
‡
Specifying 4-diphosphocytidyl-2C-methylerythritol synthase
§
GenBank database
¶
Database of Japan
‖
European Molecular Biology Laboratory database