Table 1.
Gene classification from ChIP binding data and expression data
| TF | B+ | B- | ||
| B+/C- | B+/C+ | B-/C+ | B-/C- | |
| ACE2 | 46 | 22 | 9 | 5964 |
| SWI4 | 25 | 99 | 36 | 5881 |
| SWI5 | 54 | 40 | 22 | 5925 |
| SWI6 | 54 | 39 | 48 | 5900 |
| MBP1 | 48 | 56 | 29 | 5908 |
| STB1 | 6 | 17 | 15 | 6003 |
| SKN7 | 49 | 46 | 26 | 5920 |
| FKH1 | 36 | 26 | 45 | 5934 |
| FKH2 | 59 | 46 | 48 | 5888 |
| NDD1 | 19 | 74 | 10 | 5938 |
| MCM1 | 44 | 42 | 31 | 5924 |
| ABF1 | 99 | 175 | 128 | 5639 |
| BAS1 | 34 | 8 | 17 | 5982 |
| CAD1 | 28 | 10 | 10 | 5993 |
| CBF1 | 24 | 19 | 28 | 5970 |
| GAL4 | 12 | 28 | 3 | 5998 |
| GCN4 | 26 | 53 | 11 | 5951 |
| GCR1 | 6 | 6 | 10 | 6019 |
| GCR2 | 23 | 8 | 15 | 5995 |
| HAP2 | 4 | 14 | 23 | 6000 |
| HAP3 | 11 | 11 | 16 | 6003 |
| HAP4 | 33 | 34 | 17 | 5957 |
| HSF1 | 34 | 18 | 55 | 5934 |
| INO2 | 5 | 6 | 14 | 6016 |
| LEU3 | 15 | 6 | 22 | 5998 |
| MET31 | 21 | 6 | 31 | 5983 |
| MSN4 | 24 | 6 | 13 | 5998 |
| PDR1 | 22 | 44 | 19 | 5956 |
| PHO4 | 36 | 23 | 19 | 5963 |
| PUT3 | 3 | 6 | 0 | 6032 |
| RAP1 | 113 | 87 | 64 | 5777 |
| RCS1 | 16 | 15 | 19 | 5991 |
| REB1 | 67 | 72 | 59 | 5843 |
| RLM1 | 23 | 14 | 12 | 5992 |
| RME1 | 13 | 3 | 15 | 6010 |
| ROX1 | 20 | 9 | 20 | 5992 |
| SMP1 | 24 | 39 | 16 | 5962 |
| STE12 | 33 | 17 | 28 | 5963 |
| YAP1 | 27 | 17 | 21 | 5976 |
A total of 6041 ORFs are considered, based on availability of expression data and binding data, and 1542 target genes are selected in C+ (B+/C+ and B-/C+) by applying a posterior probability cutoff of 0.5 on each Cij (see COGRIM website [32] for the lists of gene ORFs for each TF). ORF, open reading frame; TF, transcription factor.