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. 2007 Mar;175(3):1429–1440. doi: 10.1534/genetics.106.066613

TABLE 1.

Genetic variation of microsatellite loci for 13 populations of D. ananassae

Mean n Mean He Variance in repeat unit Average no. of alleles Average minimum repeat units Mean repeat units Average maximum repeat units Mean D % D′ significant P < 0.05 subgroups
Population Total 1 2
Kathmandu 16.87 0.61 14.17 4.65 5.70 10.77 17.04 0.74 21.0 2.5a 0.65b
Mandalay 6.86 0.42 10.73 2.30 6.26 10.05 11.70 0.71 15.0
Bhubaneshwar 7.61 0.55 3.88 3.17 8.17 10.19 12.17 0.82 0.58
Puri 17.87 0.58 7.83 4.86 7.28 10.67 14.63 0.67 1.6
Hyderabad 13.74 0.59 5.85 4.52 7.04 10.55 13.99 0.76 6.2
Chennai 19.48 0.61 8.43 4.96 6.13 10.51 15.78 0.59 5.15
Colombo 6.0 0.47 9.97 2.56 7.56 10.71 12.71 0.91 0.65
Bogor 25.91 0.62 10.53 6.82 5.82 11.60 16.73 0.69 3.5
Darwin 8.96 0.52 8.95 3.17 8.61 10.96 14.63 0.82 0.28
Thursday Island 40.95 0.61 4.19 6.30 6.19 10.36 13.43 0.58 51.5 18.8c 3.9d
Trinity Beach 47.83 0.60 4.13 6.52 6.19 10.48 13.47 0.61 44.7 4.7c 11.2e
Apia 37.82 0.57 4.81 6.30 6.15 9.80 13.82 0.60 10.2 8.9f
Malololelei 20.95 0.51 4.15 4.81 7.33 11.29 13.52 0.73 4.2

“Mean n,” average number of chromosomes sampled; “Mean He,” expected heterozygosity; Mean D′, average LD for all pairwise comparisons of loci; “% LD significant P < 0.05,” percentage of pairwise comparisons between loci with probability of <5% on the basis of an unbiased estimate of the exact P-value of a contingency table using the permutation test of Raymond and Rousset (1995).

a

Blue subgroup, D′ = 0.78 (Figure 3).

b

Lavender subgroup, D′ = 0.81 (Figure 3).

c

Red subgroup, D′ = 0.60 (Figure 3).

d

Tan subgroup, D′ = 0.66 (Figure 3).

e

Tan subgroup; D′ = 0.69 (Figure 3).

f

Light blue subgroup, D′ = 0.59 (Figure3).