TABLE 3.

Polymorphism in L. peruvianum and L. chilense across loci

	L. peruvianum (population LA2744)				L. chilense (population LA2884)
Genea	π total (sites)	πsyn (sites)	πnon (sites)	πnon/πsyn	π total (sites)	πsyn (sites)	πnon (sites)	πnon/πsyn
Pto	0.013 (909)	0.017 (207.6)	0.012 (701.4)	0.7	0.007 (915)	0.011 (208.8)	0.005 (706.2)	0.45
CT066	0.0095 (1152)	0.033 (283.3)	0.0019 (868.7)	0.058	0.0063 (1152)	0.024 (282.67)	0.0006 (869.33)	0.025
CT093	0.005 (1029)	0.018 (248.3)	0.001 (780.7)	0.056	0.0023 (1029)	0.008 (248.33)	0.0006 (780.67)	0.075
CT099	0.011 (888)	0.021 (238.97)	0.007 (649.03)	0.33	0.0027 (888)	0.005 (239.13)	0.0019 (648.87)	0.38
CT114	0.004 (672)	0.016 (162)	0 (510)	0	0.0009 (672)	0.0037 (162)	0 (510)	0
CT143	0.004 (468)	0.0165 (113)	0 (355)	0	0 (468)	0 (113)	0 (355)	0
CT148	0.009 (543)	0.020 (135.98)	0.0052 (407.02)	0.26	0.0045 (543)	0.0103 (136.25)	0.0025 (406.75)	0.24
CT166	0.0022 (942)	0.007 (209.5)	0.0008 (732.5)	0.11	0.0016 (942)	0.0073 (209.73)	0 (732.27)	0
CT179	0.009 (579)	0.035 (153)	0 (426)	0	0.0081 (579)	0.029 (153)	0.0005 (426)	0.017
CT189	0.0017 (354)	0.0073 (82.55)	0 (271.45)	0	0 (354)	0 (82.5)	0 (271.5)	0
CT198	0.014 (333)	0.056 (76.33)	0.0018 (256.67)	0.032	0.0032 (333)	0.007 (76.47)	0.0021 (256.53)	0.3
CT208	0.0015 (735)	0.0067 (168.1)	0 (566.9)	0	0.0007 (735)	0.0032 (168.5)	0 (566.5)	0
CT251	0.014 (1323)	0.034 (317.78)	0.007 (1005.22)	0.21	0.0014 (1329)	0.0029 (319.97)	0.0009 (1009.03)	0.31
CT268	0.0094 (1884)	0.026 (435.6)	0.0045 (1448.4)	0.17	0.007 (1884)	0.024 (435.28)	0.0023 (1448.72)	0.10
sucr	0.0095 (1110)	0.027 (267.43)	0.004 (842.57)	0.15	0.0036 (1110)	0.009 (267.5)	0.0019 (842.5)	0.21

^aRegions encoding exons analyzed. Untranslated regions and introns excluded from these estimates.