TABLE 4.
Results of coalescent simulations
|
L. peruvianum (LA2744)
|
L. chilense (LA2884)
|
|||||
|---|---|---|---|---|---|---|
| Synonymous (average)a | Nonsynonymous (average)b | Nonsynonymous (high)c | Synonymous (average)a | Nonsynonymous (average)b | Nonsynonymous (high)c | |
| π at non-R-genes | 0.023 | 0.0024 | 0.007 | 0.009 | 0.0009 | 0.0025 |
| π at Pto | 0.017 | 0.012 | 0.012 | 0.011 | 0.005 | 0.005 |
| Prob (π exp > π obs)d | 0.66 | 0.000** | 0.10 | 0.25 | 0.000** | 0.049* |
*P < 0.05, **P < 0.001.
a
Arithmetic mean of π at synonymous sites from 14 genes (CT066, CT093, CT099, CT114, CT143, CT148, CT166, CT179, CT189, CT198, CT208, CT251, CT268, and Sucr).
b
Arithmetic mean of π at nonsynonymous sites from 14 genes.
c
Highest value of π at nonsynonymous sites across 14 genes: CT251 in LA2744 and CT148 in LA2884.
d
Probability of observing a value of π greater than that observed at Pto in 1000 coalescent simulations, conditioned on the π-values of the non-R-genes.