Skip to main content
. Author manuscript; available in PMC: 2007 Sep 1.
Published in final edited form as: Brief Bioinform. 2006 Aug 9;7(3):256–274. doi: 10.1093/bib/bbl027

Appendix.

Ontological and terminological resources mentioned in this article (all URLs are valid as of 9 July, 2006).

BFO Basic Formal Ontology
http://ontology.buffalo.edu/bfo/

ChEBI Chemical Entities of Biological Interest
http://www.ebi.ac.uk/chebi/

CPT Current Procedural Terminology
http://www.ama-assn.org/ama/pub/category/3113.html

CTV3 Clinical Terms Version 3 (formerly known as the Read Codes)
http://www.nhsia.nhs.uk/terms/pages/readcodes_intro.asp

DM&D Dictionary of Medicines and Devices
http://www.dmd.nhs.uk/

DOLCE Descriptive Ontology for Linguistic and Cognitive Engineering
http://www.loa-cnr.it/DOLCE.html

EMTREE EMTREE is Elsevier’s Life Science Thesaurus
http://www.info.embase.com/emtree/about/

FMA Foundational Model of Anatomy
http://fma.biostr.washington.edu/

GALEN Generalized Architecture for Languages, Encyclopedias and Nomenclatures in medicine
http://www.opengalen.org/

GO Gene Ontology
http://www.geneontology.org/

ICD International Classification of Diseases
http://www.who.int/classifications/icd/en/

ICPC International Classification of Primary Care
http://www.globalfamilydoctor.com/wicc/

MeSH Medical Subject Headings
http://www.nlm.nih.gov/mesh/

MGED Microarray Gene Expression Data Ontology
http://mged.sourceforge.net/ontologies/MGEDontology.php

NCI Thesaurus. NCI Thesaurus
http://cancer.gov/cancerinfo/terminologyresources/

OBO Open Biomedical Ontologies
http://obo.sourceforge.net/

OPCS Office of Population Censuses and Surveys Intervention Classification
http://www.connectingforhealth.nhs.uk/interventionclassification

SNOMED Systematized Nomenclature of Medicine
http://www.snomed.org/

SNOP Systematized Nomenclature of Pathology (superseded by SNOMED)

SUMO Suggested Upper Merged Ontology
http://ontology.teknowledge.com/

UMLS Unified Medical Language System
http://umlsks.nlm.nih.gov/ (cost-free license required)