Table 2.
BM3.3-pBM1-H-2Kb | BM3.3-pBM8-H-2Kbm8 | BM3.3-VSV8-H-2Kb | ||||||
---|---|---|---|---|---|---|---|---|
BM3.3 | pBM1 | BM3.3 | pBM8 | BM3.3 | VSV8 | |||
Hydrogen bonds (6) | Hydrogen bonds (6) | Hydrogen bonds (1) | ||||||
D97β OD1 | T7 N | D97β OD2 | N6 ND2 | |||||
D97β OD1 | T7 OG1 | |||||||
R98β N | S7 OG | |||||||
R98β NH2 | F5 O | R98β NE | Y5 O | |||||
R98β N | N6 OD1 | R98β N | N6 OD1 | |||||
R98β NH2 | Wat | D4 OD1 | R98β NH1 | Y4 OH | ||||
V99β N | N6 OD1 | V99β N | N6 OD1 | |||||
V99β O | N6 ND2 | V99β O | Q6 NE2 | |||||
W31β NE1 | Wat | T7 OG | ||||||
Y97α OH | Wat | Y5 O | ||||||
Wat | Y5 N | |||||||
van der Waals contacts (14) | van der Waals contacts (20) | van der Waals contacts (18) | ||||||
W31β | 1 | T7 | Y97α | 14 | V4 | |||
D97β | 6,2 | N6,T7 | D97β | 2,1 | N6,S7 | D97β | 2,1 | Q6,G7 |
R98β | 11 | Y4 | ||||||
V99β | 2,3 | D4,N6 | V99β | 2,4 | Y4,N6 | V99β | 1 | V4 |
BM3.3 | H-2Kb | BM3.3 | H-2Kbm8 | BM3.3 | H-2Kb | |||
Hydrogen bonds (14) | Hydrogen bonds (7) | Hydrogen bonds (7) | ||||||
Q27α NE2 | E58 OE2 | Q27α NE2 | E58 OE2 | |||||
Q27α OE1 | R62 NH2 | Q27α OE1 | R62 NH2 | |||||
Q27α OE1 | R62 NE | |||||||
S29α OG | T163 OG1 | S29α OG | T163 OG1 | |||||
Y52α OH | R155 N | |||||||
K53α NZ | E154 OE1 | K53α NZ | E154 OE1 | K53α NZ | E154 OE1 | |||
Y97α O | Q65 NE2 | |||||||
G98α N | Q65 OE1 | |||||||
S51β OG | R79 NH2 | S51β OG | R79 NH2 | |||||
S51β OG | R79 NH1 | S51β OG | R79 NE | |||||
D97β OD2 | K146 NZ | D97β OD2 | K146 NZ | |||||
R98β NH2 | G69 O | R98β NH1 | G69 O | R98β NH2 | G69 O | |||
R98β NE | G69 O | R98β NH2 | G69 O | |||||
R98β NE | S73 OG | |||||||
R98β NH2 | S73 OG | |||||||
R98β NH2 | N70 OD1 | R98β NH2 | N70 OD1 | |||||
van der Waals contacts (37) | van der Waals contacts (26) | van der Waals contacts (60) | ||||||
Q27α | 2 | R62 | Q27α | 3 | R62 | |||
F31α | 2 | R155 | F31α | 3 | R155 | F31α | 1 | R155 |
Y52α | 6,6, | E154, R155, | Y52α | 2,5 | E154, R155, | Y52α | 5,9, | E154,R155, |
4 | A158 | 6 | A158 | 2 | A158 | |||
K53α | 3 | E154 | K53α | 1 | E154 | K53α | 1 | E154 |
Y97α | 1,5, | Q65,K68, | ||||||
5,1 | G69,N70 | |||||||
G98α | 3,1 | Q65,G69 | ||||||
G99α | 1,1 | K68,G69 | ||||||
W31β | 2 | V76 | W31β | 1 | V76 | W31β | 5 | V76 |
R50β | 3 | V76 | R50β | 3 | V76 | R50β | 6 | V76 |
S51β | 1 | R79 | S51β | 1 | R79 | |||
P52β | 1 | R79 | ||||||
D97β | 2 | K146 | D97β | 1 | K146 | |||
R98β | 2 | G69 | R98β | 1,2 | G69,S73 | R98β | 2,2, | G69,S73 |
1 | R72 | |||||||
V99β | 3 | R155 | V99β | 1 | R155 | V99β | 3 | R155 |
N103β | 1 | A150 | ||||||
Interactions conserved in the three complexes are depicted in red. Shared interactions between BM3.3-pBM8-H-2Kbm8 and BM3.3-pBM1-H-2Kb, and between BM3.3-pBM1-H-2Kb and BM3.3-VSV8-H-2Kb are shown in green and blue, respectively. |