Table 6.
Genes in the CPS/O-antigen biogenesis region
| orf | symbol | annotated | %AA identity/positive | species | E-Value |
| 0 | gmhD | ADP-L-glycero-D-mannoheptose-6-epimerase | 99/99 | Vibrio cholerae | 1.00E-180 |
| 1 | rmlB | DTDP-D-glucose-4,6-dehydratase | 99/99 | Vibrio cholerae | 0 |
| 2 | rmlA | Glucose-1-phosphate thymidylyltransferase | 100/100 | Vibrio cholerae | 1.00E-167 |
| 3 | rmlD | DTDP-6-deoxy-L-mannose-dehydrogenase | 99/99 | Vibrio cholerae | 1.00E-169 |
| 4 | rmlC | DTDP-6-deoxy-D-glucose-3,5-epimerase | 100/100 | Vibrio cholerae | 1.00E-104 |
| 5 | wzm | ABC transporter system integral membrane protein | 55/77 | Raoultella terrigena | 1.00E-81 |
| 6 | wzt | ABC transporter system ATPase component | 43/59 | Nitrosospira multiformis | 8.00E-86 |
| 7 | glycosyltransferase | 32/49 | Rubrobacter xylanophilus | 2.00E-24 | |
| 8 | glycosyltransferase | 40/57 | Nitrosospira multiformis | 1.00E-125 | |
| 9 | glycosyltransferase | 41/57 | Burkholderia fungorum | 1.10E-127 | |
| 10 | glycosyltransferase | 38/56 | Burkholderia sp. | 8.00E-56 | |
| 11 | dTDP-glucose-4-keto-6-deoxy-D-glucose reductase | 39/64 | Actinobacillus actinomycetemcomitans | 4.00E-21 | |
| 12 | probable acetyl transferase by domain | 30/46 | Cellulophaga sp. | 0.049 | |
| 13 | hypothetical protein | ||||
| 14 | 3-hydroxybutyryl-CoA dehydrogenase | 48/68 | Pseudoalteromonas haloplanktis | 2.00E-70 | |
| 15 | Hypothetical protein | ||||
| 16 | glycosyltransferase | 27/44 | Syntrophus aciditrophicus | 9.00E-06 | |
| 17 | Hypothetical protein | ||||
| 18 | hypothetical protein | ||||
| 19 | putative glycosyl transferase | 55/69 | Pseudomonas fluorescens | 8.00E-97 | |
| 20 | UDP-N-acetylglucosamine 2-epimerase | 67/82 | Yersinia intermedia | 1.00E-147 | |
| 21 | glycosyltransferase | 96/97 | Vibrio cholerae | 2.00E-93 | |
| 22 | nucleoside-diphosphate sugar epimerase | 99/99 | Vibrio cholerae | 0 | |
| 23 | galE | UDP-glucose 4-epimerase VC0262 | 98/99 | Vibrio cholerae | 0 |
| 24 | wbeW | galactosyl-transferase VC0263 | 99/99 | Vibrio cholerae | 4.00E-91 |
| 25 | Trypsin-like serine proteases | 96/97 | Vibrio cholerae | 1.00E-123 | |
| 26 | wbfB | hypothetical protein | 99/99 | Vibrio cholerae | 0 |
| 27 | wbfC | hypothetical protein wbfC, periplasmic | 97/97 | Vibrio cholerae | 1.00E-141 |
| 28 | wbfD | hypothetical protein wbfD | 98/98 | Vibrio cholerae | 1.00E-112 |
| 29 | hypothetical protein | 52/58 | Vibrio cholerae | 6.00E-12 | |
| 30 | wza | Periplasmic protein involved in capsular polysaccharide export | 67/82 | Vibrio splendidus | 1.00E-151 |
| 31 | wzb | Protein-tyrosine-phosphatase | 75/88 | Vibrio vulnificus | 6.00E-59 |
| 32 | wzc | Putative tyrosine-protein kinase Wzc | 75/87 | Vibrio vulnificus | 0 |
| 33 | rmlB | dTDP-D-glucose-4,6-dehydratase | 98/98 | Vibrio cholerae | 0 |
| 34 | rmlA | glucose-1-phosphate thymidylyltransferase | 100/100 | Vibrio cholerae | 1.00E-167 |
| 35 | rmlD | dTDP-6-deoxy-L-mannose-dehydrogenase | 99/99 | Vibrio cholerae | 1.00E-169 |
| 36 | rmlC | DTDP-6-deoxy-D-glucose-3,5-epimerase | 92/94 | Vibrio cholerae | 1.00E-88 |
| 37 | O-acetyltransferase | 38/58 | Enterococcus faecalis | 8.00E-17 | |
| 38 | wzx | O-antigen translocase | 30/48 | Pelodictyon luteolum | 2.00E-39 |
| 39 | glucosyltransferase | 34/53 | Pseudoalteromonas tunicate | 1.00E-39 | |
| 40 | wzy | Putative saccharide polymerase | |||
| 41 | Putative sugar acetyltransferase | 51/72 | COG0110, Cytophaga hutchinsonii | 7.00E-43 | |
| 42 | glycosyltransferase | 29/53 | Cytophaga hutchinsonii | 5.00E-41 | |
| 43 | Rhamnosyltransferase | 66/77 | Shewanella sp. | 1.00E-113 | |
| 44 | Ugd | UDP-glucose 6-dehydrogenase | 81/90 | Vibrio sp. | 0 |
| 45 | wecA | Undecaprenylphosphate N-acetylglucosamine 1-phosphate transferase | 96/99 | Vibrio cholerae | 1.00E-157 |
| 46 | Hypothetical protein | 96/96 | Vibrio cholerae | 2.00E-63 | |
| 47 | rjg | Predicted exonuclease of the beta-lactamase fold involved in RNA processing | 98/99 | Vibrio cholerae | 0 |