Table 2.

Results for five-study simulation data. True integration-driven discovery rate (tIDR) and true integration-driven revision rate (tIRR) for threshold value of posterior probability of differential expression γ = 0.95, and the number of true discovered genes for posterior expected false discovery rate peFDR = 5%, for the Bayesian standardized expression integration (SEI) and probability integration (PI) models. Results are shown for the three levels of simulated percent differentially expressed genes p_s and three levels of mean inter-study variability ${\tau }_g^2$ for the five-study simulation data.

		ps = 5%		ps = 10%		ps = 25%
Five-Study Simulation Data		SEI	PI	SEI	PI	SEI	PI
Low : mean ${\tau }_g^2$= 0.1 (DE); 0.01(non DE)	tIRR, γ = 0.95	13.7%	34.7%	3.8%	20.6%	0%	11.4%
	tIRR, γ = 0.95	4.5%	0%	6.7%	0.6%	15.4%	1.4%
	True Genes, peFDR = 5%	88	106	187	215	496	576
Medium : mean ${\tau }_g^2$= 0.3 (DE); 0.03 (non DE)	tIDR, γ = 0.95	7.2%	21.3%	2.2%	15.2%	0%	6.7%
	tIRR, γ = 0.95	9.4%	0%	10.2%	3.6%	16.8%	3.0%
	True Genes, peFDR = 5%	99	118	212	241	571	642
High : mean ${\tau }_g^2$= 0.7 (DE); 0.07 (non DE)	tIDR, γ = 0.95	3.8%	13.3%	0%	5.4%	0%	3.4%
	tIRR, γ = 0.95	9.8%	0.9%	7.9%	2.8%	10.7%	3.5%
	True Genes, peFDR = 5%	122	135	259	270	654	688