Table 5.

Sensitivity analysis results for the Bacillus subtilis biological data. Sensitivity analysis results for the prior degrees of freedom assigned to the slide and experiment effect variance parameters, ${\phi }_{jg}^2$ and ${\sigma }_{jg}^2$, respectively, for the B. subtilis mutant and induction biological study data. Shown are the integration-driven discovery rate (IDR), integration-driven revision rate (IRR) and posterior expected false discovery rate (peFDR) for threshold value of posterior probability of differential expression γ = 0.95, for the standardized expression integration (SEI) and probability integration (PI) models applied to the B. subtilis mutant and induction biological study data.

Prior Degrees of Freedom		Integration-Driven Discovery Rate, γ = 0.95		Integration-Driven Revision Rate, γ = 0.95		Posterior Expected FDR, γ = 0.95
${\phi }_{jg}^2$	${\sigma }_{jg}^2$	SEI	PI	SEI	PI	SEI	PI
3	3	35.7%	37.9%	20.3%	8.9%	0.013	0.0073
6	6	13.9%	20.1%	7.9%	5.3%	0.0088	0.0049
10	10	7.1%	14.0%	7.1%	2.4%	0.0059	0.0037
20	20	6.3%	14.5%	7.7%	0.0%	0.0044	0.0040
40	40	5.3%	13.3%	10.1%	0.7%	0.0038	0.0041