Table 2.

Synthetic Oligonucleotides Used for Hybridization AT Tailing (HybrAT) Probes

Probe	Position	Sequence
AS-5′ biotin-SIVnef(AT)10	9380–9419*	5′ biotin-CCCATAAGTCTCCCCACGCGCCCGCAAGAGTCTCTGTCGCATATATATATATATATATAT-3′
S-5′ biotin-SIVnef(AT)10	9419–9380	5′ biotin-GCGACAGAGACTCTTGCGGGCGCGTGGGGAGACTTATGGGATATATATATATATATATAT-3′
AS-5′ biotin-HIVnef(AT)10	8910–8871†	5′ biotin-GCTCCATGTTTTTCCAGGTCTCGGGATGCTGCTCCCACCCCATATATATATATATATATAT-3′
S-5′ biotin-HIVnef(AT)10	8871–8910	5′ biotin-GGGGTGGGAGCAGCATCCCGAGACCTGGAAAAACATGGAGCATATATATATATATATATAT-3′
AS-5′ biotin-HIVgag1(AT)10	1484–1447	5′ biotin-CTTGGTTCCTCATCTGGCCTGGTGCAATAGGCCCTGCATATATATATATATATATAT-3′
S-5′ biotin-HIVgag1(AT)10	1447–1484	5′ biotin-GCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGATATATATATATATATATAT-3′
AS-5′ biotin-HIVgag2(AT)10	1654–1617	5′ biotin-GTCCTTGTCTTATGTCCAGAATGCTGGTAGGGCTATACATATATATATATATATATAT-3′
S-5′ biotin-HIVgag2(AT)10	1617–1654	5′ biotin-GTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACATATATATATATATATATAT-3′
AS-5′ biotin-HIVgag3(AT)10	1864–1827	5′ biotin-TATGGCCGGGTCCTCCCACTCCCTGACATGCTGTCATCATATATATATATATATATAT-3′
S-5′ biotin-HIVgag3(AT)10	1827–1864	5′ biotin-GATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAATATATATATATATATATAT-3′

*Nucleotide positions refer to the SIVmac239 strain 20 (GeneBank, M33262).

^†Nucleotide positions refer to pNL4-3 21 (GeneBank, M19921).

AS is anti-sense orientation and S is sense orientation.