Table 4.
Distribution of average packing values in helical membrane and soluble proteins*
| Position‡ | Membrane proteins
|
α-Bundle proteins†
|
α-Nonbundle proteins†
|
αβ proteins†
|
||||
|---|---|---|---|---|---|---|---|---|
| Packing value | Occurrence (%) | Packing value | Occurrence (%) | Packing value | Occurrence (%) | Packing value | Occurrence (%) | |
| ≤0.3 (exposed) | 0.250 | 15.61 | 0.234 | 24.17 | 0.231 | 23.48 | 0.228 | 29.26 |
| >0.3–0.55 (interm.) | 0.432 | 68.28 | 0.431 | 58.37 | 0.437 | 61.45 | 0.419 | 56.05 |
| >0.55 (buried) | 0.598 | 16.11 | 0.590 | 17.46 | 0.591 | 15.07 | 0.591 | 14.69 |
The occluded surface calculations were carried out on full protein structures, but the packing values reported represent the helical residues only.
†The soluble proteins were classified according to Michie et al. (26).
‡See text.