Table II.
TBestDB cluster IDs; number of ESTs in each cluster; proposed gene and protein names for A. acetabulum, B. natans, E. gracilis, M. viride, and Micromonas sp. clusters; and GenBank (Third Party Annotation) accession numbers
Also included are newly described O. tauri LHC sequences. Asterisks indicate that the sequence is a polyprotein. Not all sequences present in table are included in all analyses.
| Species Name | Cluster ID | Number of ESTs | Proposed Gene Name | Proposed Protein Name | Accession Number |
|---|---|---|---|---|---|
| A. acetabulum | Aa0009 | 2 | Lhcbm13 | LHCII | BK005993 |
| Aa0027 | 4 | Lhcb4 | CP29 | BK005994 | |
| Aa0199 | 2 | Lhcbm1 | LHCII | BK005995 | |
| Aa0218 | 3 | Lhcbm9 | LHCII | BK005996 | |
| Aa0544 | 1 | Lhca9 | LHCI-9 | BK005997 | |
| Aa0891 | 1 | Lhca6 | LHCI-6 | BK005998 | |
| Aa0913 | 1 | Lhca7 | LHCI-7 | BK005999 | |
| Aa0942 | 1 | Lhcbm11 | LHCII | BK006000 | |
| Aa1077 | 2 | Lhca3 | LHCI-3 | BK006001 | |
| Aa1079 | 2 | Lhcbm12 | LHCII | BK006002 | |
| Aa1102 | 2 | Lhcbm8 | LHCII | BK006003 | |
| Aa1122 | 2 | Lhcbm4 | LHCII | BK006004 | |
| Aa1176 | 3 | Lhcbm10 | LHCII | BK006005 | |
| Aa1193 | 3 | Lhcbm3 | LHCII | BK006006 | |
| Aa1213 | 11 | Lhcbm6 | LHCII | BK006007 | |
| Aa1216 | 18 | Lhcbm5 | LHCII | BK006008 | |
| Aa2029 | 1 | Lhca2 | LHCI-2 | BK006009 | |
| Aa2098 | 2 | Lhcb5 | CP26 | BK006010 | |
| Aa2324 | 1 | Lhcbm2 | LHCII | BK006011 | |
| Aa2338 | 2 | Lhcbm7 | LHCII | BK006012 | |
| Aa0242 | 2 | PsbS1 | PSBS1 | BK006013 | |
| Aa0911 | 3 | PsbS2 | PSBS2 | BK006014 | |
| B. natans | Bn0444 | 4 | Lhcy1 | LHCY | BK005986 |
| Bn0464 | 4 | LI818;1 | LI818-1 | BK005987 | |
| Bn0525 | 8 | Lhcbm2 | LHCII | BK005988 | |
| Bn0551 | 26 | Lhcbm3 | LHCII | BK005989 | |
| Bn0553 | 27 | Lhcbm7 | LHCII | BK005990 | |
| Bn1177 | 1 | LI818;2.2 | LI818-2 | BK005991 | |
| Bn1678 | 1 | Lhcz1 | LHCZ | BK005992 | |
| E. gracilis | Eg0021 | 118 | Lhcb4 | CP29 | BK005977 |
| Eg0137* | 10 | Lhcbm1 | LHCII | BK005978 | |
| Eg1193* | 1 | Lhcbm3 | LHCII | BK005979 | |
| Eg1913* | 2 | Lhcbm4 | LHCII | BK005980 | |
| Eg2532 | 9 | Lhca3 | LHCI-6 | BK005981 | |
| Eg2554* | 12 | Lhcbm5 | LHCII | BK005982 | |
| Eg2577* | 14 | Lhcbm6 | LHCII | BK005983 | |
| Eg2590* | 27 | Lhca2 | LHCI-(1-4) | BK005984 | |
| Eg2596* | 34 | Lhca1 | LHCI-(1-4) | BK005985 | |
| M. viride | Mv0016 | 33 | Lhca3 | LHCI-3 | BK006015 |
| Mv0021 | 27 | Lhcp1.2 | LHCP | BK006016 | |
| Mv0039 | 14 | Lhca4 | LHCI-4 | BK006017 | |
| Mv0063 | 142 | Lhcbm1 | LHCII | BK006018 | |
| Mv0096 | 31 | Lhcb4 | CP29 | BK006019 | |
| Mv0099 | 17 | Lhca2 | LHCI-2 | BK006020 | |
| Mv0237 | 49 | Lhcbm4 | LHCII | BK006021 | |
| Mv0551 | 12 | Lhcbm2 | LHCII | BK006022 | |
| Mv0574 | 35 | Lhca5 | LHCI-4 | BK006023 | |
| Mv1486 | 13 | Lhca9 | LHCI-2 | BK006024 | |
| Mv1488 | 14 | Lhcb5 | CP26 | BK006025 | |
| Mv1492 | 25 | Lhca1 | LHCI-1 | BK006026 | |
| Mv1495 | 38 | Lhcp1.1 | LHCP | BK006027 | |
| Mv2259 | 14 | Lhcbm3 | LHCII | BK006028 | |
| Mv2412 | 2 | LI818;2 | LI818-2 | BK006029 | |
| Micromonas sp. | Ms0002 | 34 | Lhcp2.4 | LHCP | BK006030 |
| Ms0014 | 5 | Lhcp3 | LHCP | BK006031 | |
| Ms0015 | 33 | Lhcp2.5 | LHCP | BK006032 | |
| Ms0037 | 6 | Lhcb5 | CP26 | BK006033 | |
| Ms0056 | 19 | LI818;2 | LI818-2 | BK006034 | |
| Ms0066 | 49 | Lhcp2.3 | LHCP | BK006036 | |
| Ms0411 | 7 | Lhca3 | LHCI-3 | BK006035 | |
| Ms0669 | 3 | Lhca9 | LHCI-9 | BK006037 | |
| Ms0696 | 4 | Lhca2 | LHCI-2 | BK006038 | |
| Ms0726 | 5 | Lhca4 | LHCI-4 | BK006039 | |
| Ms0739 | 11 | LI818;1 | LI818-1 | BK006040 | |
| Ms0741 | 13 | Lhcp2.2 | LHCP | BK006041 | |
| Ms0743 | 8 | Lhcp1 | LHCP | BK006042 | |
| Ms1341 | 1 | Lhca1 | LHCI-1 | BK006043 | |
| Ms2046 | 53 | Lhcp2.1 | LHCP | BK006044 | |
| O. tauri | Ot03g04770 | – | Lhca2 | LHCI-2 | – |
| Ot06g04910 | – | PsbS | PSBS | – |