Table 3.
E. coli MG1655 LSMMG regulated genes in rich (LB) medium.
| LSMMG up-regulated genes | |||||||
| Gene | b# | Contran | Ave. Fold Change | Average p-value | Gene Product | Product Location | Present in S. Typhimurium |
| accA | b0185 | 2.05 | 0.2873 | acetyl-coenzyme A carboxylase | cytoplasm | present | |
| LSMMG down-regulated genes | |||||||
| apt | b0469 | -2.22 | 0.0005 | adenine phosphoribosyltransferase, adenine salvage | cytoplasm | present | |
| sucD | b0729 | -2.15 | 0.0001 | succinyl-coA synthetase alpha subunit | cytoplasm | present | |
| rplY | b2185 | -7.57 | 0.0506 | 50S ribosomal subunit protein L25 | cytoplasm | present | |
| rplS | b2606 | yes | -2.99 | 0.0597 | 50S ribosomal subunit protein L19 | cytoplasm | present |
| trmD | b2607 | yes | -2.59 | 0.0211 | tRNA (guanine-1) methyltransferase | cytoplasm | present |
| rimM | b2608 | yes | -2.67 | 0.0024 | protein required for wild-type 16S rRNA processing | cytoplasm | present |
| rpsP | b2609 | yes | -3.38 | 0.0046 | 30S ribosomal subunit protein S16 | cytoplasm | present |
| ypjD | b2611 | -2.26 | 0.0011 | ORF, putative membrane protein | membrane orthologue | ||
| rplU | b3186 | -2.41 | 0.0006 | 50S ribosomal subunit protein L21 | cytoplasm | present | |
| rplA | b3984 | yes | -5.33 | 0.0538 | 50S ribosomal protein I1 | cytoplasm | present |
| rplJ | b3985 | yes | -6.05 | 0.0542 | 50S ribosomal subunit protein L10 | cytoplasm | present |
| rpsF | b4200 | yes | -3.09 | 0.0003 | 30S ribosomal subunit protein S6 | cytoplasm | present |
| rpsR | b4202 | yes | -3.31 | 0.0174 | 30S ribosomal subunit protein S18 | cytoplasm | present |
| rplI | b4203 | yes | -2.81 | 0.0123 | 50S ribosomal subunit protein L9 | cytoplasm | present |
Ave. Fold Change column average of 3 experiments and Average p-value column average p-values from the 2 rich LB media functional genomic experiments.
Underlined: associated or involved in membrane function, production or regulation.