Figure 5.

E value based retrieval rate. The figure plots the percentage of query motifs that successfully matched the correct JASPAR target as a function of the number of sites used to create the query motif. Here 'success' means that the top-ranked motif is the correct target and has an E value less than 0.01. ALLR, average log-likelihood ratio; ED, euclidean distance; FIET, Fisher-Irwin exact test; KLD, Kullback-Leibler divergence; PCC, Pearson correlation coefficient; PCST, Pearson χ² test; SW, Sandelin-Wasserman function.