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. 2007 Mar 9;92(10):3674–3685. doi: 10.1529/biophysj.106.101238

TABLE 2.

Changes in stability and unfolding kinetics for TII27, TNfn3, and their mutants in SDS and chemical denaturants

Protein ΔΔGD-N* Inline graphic Inline graphic Inline graphic§
TNfn3 wild-type ≡ 0 7.21 ± 0.26 × 10−5 5.81 × 10−3 1.3 × 10−2
TN P25A 1.73 ± 0.13 1.92 ± 0.46 × 10−3 1.02 × 10−1 1.04
TN I48A 2.19 ± 0.12 2.32 ± 0.33 × 10−4 9.3 × 10−3 8.09 × 10−2
TN Y57G 4.14 ± 0.10 1.29 ± 0.22 × 10−2 4.12 × 10−1 3.32
TN L62A 4.22 ± 0.11 7.91 ± 1.40 × 10−3 8.39 × 10−2 1.57 × 10−1
TN T66A 1.96 ± 0.12 8.11 ± 1.80 × 10−4 3.2 × 10−2 9.41 × 10−2
TII27 wild-type ≡ 0 4.9 ± 0.6 × 10−4 3.22 ± 2.1 × 10−4 3.17 ± 0.23 × 10−3
TI V4A 2.45 ± 0.10 1.3 ± 0.1 × 10−3 6.98 × 10−3 2.07 × 10−2
TI L8A 2.45 ± 0.10 1.2 ± 0.2 × 10−3 1.54 ± 0.54 × 10−2 3.72 ± 0.89 × 10−2
TI L36A 3.3 ± 0.10 3.9 ± 0.3 × 10−3 1.96 ± 0.19 × 10−2 1.31 ± 0.00 × 10−1
TI L60A 4.88 ± 0.08 3.4 ± 0.3 × 10−3 1.87 ± 0.22 × 10−2 3.26 ± 0.37 × 10−2
*

The mutation-induced change in the difference in free energy between the denatured state, D, and the native state, N, on mutation (kcal·mol−1), relative to wild-type protein. Obtained from Fowler and Clarke (15) (TII27) and Hamill et al. (43) (TNfn3).

The Inline graphic (s−1) values are obtained from Fowler and Clarke (15) (TII27, GdmCl) and Hamill et al. (43) (TNfn3, Urea). For TII27 the authors determined Inline graphic by linear extrapolation of log Inline graphic at different denaturant concentrations to zero molar denaturant; Inline graphic for TNfn3 mutants was calculated from Hamill et al. (43) by use of the following equation: ΔInline graphic(mutant) = −RTln(ku/kf)mutant.

Unfolding rate constant (s−1) in SDS at the plateau level (TII27) and at the highest level before inhibition sets in (TNfn3) (cfr. Figs. 7 and 8). Errors are from the direct fits to Eq. 2 (TNfn3) or Eq. 3 (TII27). In several cases, it was not possible to obtain a stable fit, making it necessary to estimate the value by visual inspection.

§

Unfolding rate constant (s−1) interpolated to 500 mM SDS.