TABLE 3.
The summary of nomenclature
| Symbols | Units | Definitions |
|---|---|---|
| A0 | mM | Initial insulin concentration. |
| A1 | mM | Insulin monomer or insulin monomer concentration. |
| Ahex | mM | Original insulin hexamer or its concentration. |
| Ai | mM | Insulin cluster consisting of i monomers or its concentration. |
| b | mM−1 | Proportional constant relating fibril concentration to experimental signal. |
| dAF | m | The mean free path between monomer and fibril. |
| DAi | m2 s−1 | Diffusivity of oligomer Ai. |
| DF | m2 s−1 | Diffusivity of fibril. |
| ΔG° | Kcal/mol | Gibbs free energy of the reaction of monomers becoming (n–1)-mers. |
| f | — | Our fibrillation model expressed as a function. |
| F | mM | Fibrils or fibril concentration. |
| i | Number | Our fibrillation model expressed as a function. |
| Jhex | h−1 mM | The reaction flux of original insulin decomposition. |
| Jnu,i | h−1 mM | The flux of ith nucleation reaction. |
| Jfb,i | h−1 mM | The flux of ith fibrillation reaction. |
| kapp | h−1 | The apparent growth rate of fibril, which is equal to 1/τ. |
| Kc | mM−(n−2) | Equilibrium constant between monomers and (n−1)-mers. |
| khex | h−1 | Reaction rate constant of original insulin decomposition. |
| kfb− | h−1 | General reverse rate constant of fibrillation reaction. |
| kfb,1 | h−1 mM−1 | Forward rate constant of the first fibrillation reaction. |
| kfb,i | h−1 mM−1 | Forward rate constant of ith fibrillation reaction. |
| kfb,−1 | h−1 | Reverse rate constant of ith fibrillation reaction. |
| knu,1 | h−1 mM−1 | Forward rate constant of the first nucleation reaction. |
| knu− | h−1 | General reverse rate constant of nucleation reaction. |
| knu,i | h−1 mM−1 | Forward rate constant of ith nucleation reaction. |
| knu,−i | h−1 | Reverse rate constant of ith nucleation reaction. |
| mi, mf | h−1 | The slope of initial and final fibrillation response curve, respectively. |
| n | Number | Critical number of monomers in a nucleus. |
| nexp | Number | The number of experimental data points. |
| N | Number | The average size of fibrils in terms of number of monomer. |
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mol−1 | Avogadro constant. |
| Φ(θ) | — | The objective function to be optimized with respect to θ. |
| R | J/mol K | Ideal gas constant, 8.314. |
| R2 | — | Coefficient of determination. |
| RAi | m | Characteristic length of oligomer Ai. |
| r1, r2 | mM | The first and second roots of the fibril quadratic equation. |
| t0 | h | The time to 50% of maximal signal or the time of inflection point. |
| ti | h | The time of ith experimental data point. |
| tν,α/2 | — | Student's t-distribution with degree of freedom ν, significance level α. |
| τ | h | The time constant of fibril growth; it is equal to 1/kapp. |
| θ | — | The vector of parameters to be estimated. |
| V1 | m3 | The mean volume of a monomer. |
| X | — | Linearized design matrix (Jacobian matrix). |
| Y | — | UV-vis absorbance of ThT fluorescence intensity. |
