TABLE 1.
Results of selection analyses lnRH, lnRV, fdist2, detSel, and newfst (see text), along with protein homology, putative function, and chromosomal locations for mapped markers
| Contig/EST | lnRHa | lnRVa | fdist2b | detSelc | newfstd | Populations | Function | Protein homology | Chromosome | cM |
|---|---|---|---|---|---|---|---|---|---|---|
| Contig 0291 | *** | ** | — | *** | — | SMS | Catalytic/metabolism | Secretory peroxidase | 15 | 36.2 |
| Contig 1731 | *** | *** | ***** | — | * | SMN | DNA binding | DNA-binding protein | 13 | 103 |
| Contig 1891 | *** | ** | ** | **** | * | Plains | DNA binding | DNA-binding protein | — | |
| Contig 2016 | *** | *** | — | — | * | SMN | DNA binding | Heat-shock protein | 16 | 36.8 |
| Contig 2135 | *** | ** | *** | **** | *** | SMS, SMN | DNA binding | Ovule development | — | |
| Contig 2281 | **** | *** | — | — | * | SMS, SMN | Catalytic/metabolism | Catalytic/metabolism | 11 | 39.1 |
| Contig 2293 | **** | **** | — | — | ** | Utah | Repair of DNA | Purple acid phosphatase | 8 | 79 |
| Contig 2727 | *** | *** | — | — | SMN | Unknown | — | 3 | 30 | |
| Contig 3403 | *** | **** | ** | *** | * | SMN | Unknown | None | — | — |
| Contig 3590 | *** | ** | — | — | — | Utah | Membrane | COPT5 | — | — |
| Contig 5468 | *** | *** | ** | — | ** | SMN | Catalytic/metabolism | Cellulose synthase like | — | — |
| QHA19L11 | *** | *** | *** | **** | ** | SMS | Unknown | None | — | — |
| QHA6L06 | ***** | ****** | — | — | *** | SMS | Membrane | Xyloglucan galactosyltransferase | — | — |
| QHB12L21 | *** | **** | *** | **** | ** | SMN | Cell wall | None | 10 | 77.4 |
| QHB33B17 | *** | ** | — | *** | **** | Utah | DNA binding | Squamosa promoter binding protein | 8 | 218 |
| QHG7N09 | **** | **** | — | **** | ** | Plains | Unknown | None | — | — |
| QHJ18D19 | ** | *** | — | *** | *** | SMS, SMN | Catalytic/metabolism | Putative dehydrogenase | — | — |
*P < 0.10, **P < 0.05, ***P < 0.01, ****P < 0.001, *****P < 0.0001.
a
Tests were performed following Schlotterer (2002) and Schlotterer and Dieringer (2005).
b
The results of the program fdist2, implementing the protocol from Beaumont and Nichols (1996).
c
The results from the program detSel, which performs the calculations outlined in Vitalis et al. (2001).
d
Summary of the results of the program newfst.c (Beaumont and Balding 2004).