TABLE 1.
Predicted ORFs in the Apple S9 haplotype
| ORF | Homolog, accession no. (E-value) |
|---|---|
| ORF1 | Medicago truncatula putative retrotransposon, ABE87982 (2e−90) |
| ORF2 | Oryza sativa retrotransposon, XP_473330 (e−59) |
| ORF3 | Unknown |
| ORF4 | Unknown |
| ORF5 | Unknown |
| ORF6 | Unknown |
| ORF7 | O. sativa hypothetical protein, ABA95009 (3e−16) |
| ORF8 | Unknown |
| ORF9 | Unknown |
| ORF10 | Solanum demissum putative retroelement, AAT40504 (2e−43) |
| ORF11 | Unknown |
| ORF12 | Unknown |
| ORF13 | M. truncatula putative retroelement, ABE91625 (5e−57) |
| ORF14 | M. truncatula hypothetical protein, ABE93286 (3e−6) |
| ORF15 | O. sativa putative retroelement, ABA98201 (0) |
| ORF16 | O. sativa putative retroelement, ABA98732 (6e−27) |
| ORF17 | O. sativa putative retroelement, AAV24758 (4e−36) |
| ORF18 | Unknown |
| ORF19 | Arabidopsis thaliana putative retroelement, AAC33961 (9e−12) |
| ORF20 | Prunus mume S1-SLFL2, AB092625 (6e−36) |
| ORF21 | Unknown |
| ORF22 | A. thaliana unknown protein, BAD44360 (3e−8) |
| ORF23 | M. truncatula putative retroelement, ABE83303 (3e−153) |
| ORF24 | Unknown |
| ORF25 | Unknown |
| ORF26 | Phaseolus vulgaris putative retroelement, AAR13317 (8e−7) |
| ORF27 | O. sativa putative retroelement, ABA93344 (e−3) |
| ORF28 | Unknown |
| ORF29 | P. mume S7-SLFL1, AB092624 (2e−41) |
| ORF30 | Unknown |
| ORF31 | Unknown |
| ORF32 | Unknown |
| ORF33 | Unknown |
| ORF34 | Vitis vinifera putative retroelement, BAD18986 (2e−23) |
| ORF35 | Unknown |
| ORF36 | Unknown |
| ORF37 | Unknown |
| ORF38 | Unknown |
| ORF39 | Malus x domestica retrotransposon, AY603367 (3e−122) |
| ORF40 | Unknown |
| ORF41 | Unknown |
| ORF42 | A. thaliana putative retroelement, AAD15534 (4e−18) |
| ORF43 | M. x domestica S9-RNase, AY187627 (4e−148) |
| ORF44 | O. sativa putative retroelement, ABF98943 (3e−68) |
| ORF45 | Unknown |
| ORF46 | O. sativa putative retroelement, ABA93430 (3e−23) |
| ORF47 | Unknown |
| ORF48 | Unknown |
| ORF49 | Unknown |
| ORF50 | O. sativa putative retroelement, XP_474875 (4e−25) |
| ORF51 | Unknown |
| ORF52 | O. sativa putative retroelement, AAP52462 (5e−4) |
| ORF53 | O. sativa putative retroelement, XP_470707 (2e−58) |
| ORF54 | M. truncatula putative retroelement, ABE94393 (0) |
| ORF55 | Unknown |
| ORF56 | Unknown |
| ORF57 | M. truncatula putative retroelement, ABE87633 (6e−8) |
| ORF58 | Unknown |
| ORF59 | Unknown |
| ORF60 | M. truncatula putative retroelement, ABE90802 (4e−8) |
| ORF61 | P. mume S1-SLFL1, AB092623 (2e−46) |
| ORF62 | Unknown |
| ORF63 | O. sativa putative aminotransferase, XP_467987 (2e−7) |
| ORF64 | O. sativa putative retroelement, NP_919970 (5e−37) |
| ORF65 | O. sativa putative retroelement, NP_920511 (e−42) |
| ORF66 | O. sativa putative retroelement, XP_474437 (8e−148) |
| ORF67 | O. sativa putative retroelement, ABA95102 (5e−50) |
| ORF68 | Unknown |
| ORF69 | Unknown |
| ORF70 | Unknown |
| ORF71 | M. truncatula putative retroelement, ABE87982 (4e−88) |