TABLE 2.
Sequence divergence of the four new S. latifolia X/Y gene pairs
| Best BLAST hit to A. thaliana genome
|
Divergence in coding sequence
|
Silent site (synonymous and noncoding) divergence
|
||||||
|---|---|---|---|---|---|---|---|---|
| Locus | Locus name | Locus tag | % amino acid identity | No. of codons analyzed | Ks (%) | Ka (%) | No. of sites analyzed (bp) | Nucleotide divergence (%) |
| SlCypX/SlCypY | Cyp2 | At3G44600 | 80 | 553 | 6.1 | 0.8 | 3785 | 6.4 |
| SlX6a/SlY6a | Unknown protein | At2G34570 | 39 | 86 | 20.3 | 0.5 | 1165 | 18.1 |
| SlX6b/SlY6b | Unknown protein | At2G34570 | 41 | 200 | 4.5 | 0.4 | 2903 | 5.7 |
| SlX7/SlY7 | Unknown protein | At5G48020 | 75 | 316 | 24.0 | 2.6 | 1395 | 14.9 |
Nucleotide divergence values are shown for different site types, with Jukes–Cantor correction.