TABLE 3.
Relationship between cutoff value and clustering of DT104 strains by use of three different cluster analysis methods
| Cluster analysis method and cutoff value (%) | No. of strains
|
No. of clusters | Cluster designation | No. of clustered strains isolated from building:
|
|||
|---|---|---|---|---|---|---|---|
| Unclustered | Clustered | J | YS | Total | |||
| XbaI | |||||||
| 95 | 9 | 43 | 2 | 95-X1 | 21 | 20 | 43 |
| 95-X2 | 2 | 0 | |||||
| 90 | 3 | 49 | 3 | 90-X1 | 22 | 22 | 49 |
| 90-X2 | 0 | 2 | |||||
| 90-X3 | 3 | 0 | |||||
| 85 | 3 | 49 | 1 | 85-X1 | 25 | 24 | 49 |
| 80 | 1 | 51 | 1 | 80-X1 | 26 | 25 | 51 |
| 75 | 0 | 52 | 1 | 75-X1 | 26 | 26 | 52 |
| BlnI | |||||||
| 95 | 4 | 48 | 3 | 95-B1 | 22 | 0 | 48 |
| 95-B2 | 0 | 24 | |||||
| 95-B3 | 2 | 0 | |||||
| 90 | 1 | 51 | 1 | 90-B1 | 26 | 25 | 51 |
| 85 | 0 | 52 | 1 | 85-B1 | 26 | 26 | 52 |
| VNTR | |||||||
| 95 | 3 | 49 | 3 | 95-V1 | 24 | 15 | 49 |
| 95-V2 | 0 | 8 | |||||
| 95-V3 | 2 | 0 | |||||
| 90 | 1 | 51 | 3 | 90-V1 | 26 | 15 | 51 |
| 90-V2 | 0 | 8 | |||||
| 90-V3 | 0 | 2 | |||||
| 85 | 1 | 51 | 2 | 85-V1 | 26 | 23 | 51 |
| 85-V2 | 0 | 2 | |||||
| 80 | 1 | 51 | 2 | 80-V1 | 26 | 23 | 51 |
| 80-V2 | 0 | 2 | |||||
| 75 | 0 | 52 | 2 | 75-V1 | 26 | 23 | 52 |
| 75-V2 | 0 | 3 | |||||