TABLE 3.
L. sakei 23K genes that were induced during raw-sausage fermentation
| Classification by Clusters of Orthologous Groups | Clone | Redundancy | Product or function (gene[s]) | GenBank accession no. of gene product | Mutant strain | Genomic localization of ici fragmenta |
|---|---|---|---|---|---|---|
| Amino acid transport and metabolism | ici05 | 1 | l-Asparaginase 2 (asnA2, LSA1693) | YP_396306 | RVASP | 1675301-1675454 |
| Carbohydrate transport and metabolism | ici06 | 60 | Phosphoglucomutase (pgm, LSA0521) | YP_395133 | 536970-537333 | |
| Lipid metabolism | ici19 | 23 | Undecaprenyl pyrophosphate synthetase (uppS, LSA1260) | YP_395871 | 1242610-1242876 | |
| Translation, ribosomal structure, and biogenesis | ici04 | 1 | Asparaginyl-tRNA synthase (asnS, LSA0914) | YP_395525 | 904640-904886 | |
| DNA replication, recombination, and repair | ici23 | 1 | Transposase of IS1520 orfA (tnpA1-IS1520, LSA0145) | YP_394754 | 140625-140698 | |
| Posttranslational modifications, protein turnover, and chaperones | ici11 | 2 | Regulator of class III heat shock genes (ctsR, LSA1780) | YP_396393 | RVCTSR | 1757863-1758224 |
| Signal transduction mechanisms | ici12 | 1 | Response regulator, two-component system (rrp-3, LSA0077) | YP_394688 | RVRR3 | 72282-72393 |
| General function predicted only | ici09 | 2 | Hypothetical metallo-β-lactamase (LSA1065) | YP_395675 | RVBETA | 1061711-1061893 |
| ici15 | 3 | Hypothetical cell surface protein, ErfK family (LSA1649) | YP_396262 | RVERFK | 1634364-1634458 | |
| ici20 | 2 | Hypothetical transcription regulator, Xre family (LSA1717) | YP_396330 | 1700921-1701165 | ||
| ici17 | 2 | Hypothetical integral membrane protein, TerC family (LSA1637) | YP_396250 | RVTERC | 1622922-1623152 | |
| Function unknown | ici10 | 5 | Hypothetical small protein (LSA1714) | YP_396327 | 1698813-1698907 | |
| ici03 | 2 | Hypothetical small peptide (LSA0121) | YP_394731 | 112773-113780 | ||
| ici14 | 5 | Hypothetical protein (LSA0945) | YP_395556 | 932126-932667 | ||
| ici18 | 4 | Hypothetical membrane protein, nodulin-21-like/DUF125 family (LSA1194) | YP_395806 | RVNOD | 1175881-1175993 |
a
Localization of ici fragments on the genome of L. sakei 23K (GenBank accession no. NC_007576).