TABLE 3.
Putative genes identified on the genomic fragment pSW1H8 (T. swinhoei)
| CDS | Putative function | Most similar homolog (protein, accession no., and origin) | Similarity/identity (%) | No. of aab |
|---|---|---|---|---|
| NuoI (partial) | NADH:ubiquinone oxidoreductase, I subunit | NuoF (AE000513), Deinococcusradiodurans | 90/79 | |
| NuoH | NADH:ubiquinone oxidoreductase, H subunit | DR1498 (AAF11065), Deinococcusradiodurans | 77/65 | 337 |
| NuoG | NADH:ubiquinone oxidoreductase, G subunit | DR1499 (AAF11066), Deinococcusradiodurans | 60/48 | 811 |
| NuoEF | NADH:ubiquinone oxidoreductase, E+F subunit | NuoF (AAHE01000001), Deinococcusgeothermalis | 62/76 | 639 |
| NuoD | NADH:ubiquinone oxidoreductase, D subunit | DR1503 (AAF11069), Deinococcusradiodurans | 77/64 | 404 |
| NuoC | NADH:ubiquinone oxidoreductase, C subunit | NQO5 (AAA97940), Thermusthermophilus | 68/53 | 201 |
| NuoB | NADH:ubiquinone oxidoreductase, B subunit | DR1505 (AAF11070), Deinococcusradiodurans | 94/85 | 178 |
| NuoA | NADH:ubiquinone oxidoreductase, A subunit | DR1506 (AAF11072), Deinococcusradiodurans | 72/59 | 108 |
| ORF9a | Proteic killer suppression protein | PSPTO0423 (AAO53967), Pseudomonas syringae | 67/43 | |
| ORF10a | Putative transcriptional regulator | R00504 (CAC41941), Rhizobiummeliloti | 67/50 | |
| ORF11 | ABC transporter, substrate binding protein | ALR0543 (EAL75729), Anabaena sp. strain PCC7120 | 66/46 | 304 |
| ORF12 | Putative ATP binding protein | NE1564 (CAD85475), Nitrosomonaseuropaea | 66/49 | 251 |
| SupB | ACP | AcpP (AAC07567), Aquifexaeolicus | 51/30 | 76 |
| SupC | Phosphopantetheinyl transferase | SLR0495 (BAA10326), Synechocystis sp. strain PCC6803 | 52/39 | 252 |
| SupD | Hydrolase or acyltransferase? | PA5513 (AAG08898), Pseudomonas aeruginosa | 37/24 | 307 |
| SupA | PKS (KS AT DH MT ER KR ACP KS [AT]) | 3,461 | ||
| ORF17 | Permease protein | BtuC (AAQ59234), Chromobacteriumviolaceum | 30/47 | 222 |
| ORF18 | ABC transporter, iron binding protein | ALR1382 (BAB73339), Anabaena sp. strain PCC7120 | 68/47 | 332 |
| ORF19 | Peptide amidase precursor | PAM (CAC93616), Xanthomonasmaltophilia | 67/53 | 498 |
| ORF20 | Sulfatase | AtsG (CAD74202), Rhodopirellulabaltica | 65/52 | 515 |
| ORF21 | Sugar permease | BH1865 (BAB05584), Bacillus halodurans | 65/43 | 442 |
| ORF22 | Sugar permease | BH1866 (BAB05585), B. halodurans | 66/45 | 288 |
| ORF23 | Sugar permease | ABC1215 (BAD63753), Bacillus clausii | 71/51 | 288 |
| ORF24 | Sarcosine dehydrogenase | SAV6951 (BAC74662), Streptomycesavermitilis | 58/44 | 823 |
| ORF25a | SnoK-like protein | BC5091 (AAP11960), Bacillus cereus | 49/26 | |
| ORF26 | X-Pro dipeptidase | ST2323 (BAB67434), Sulfolobustokodaii | 50/30 |
a
Belongs to a pseudogene.
b
aa, amino acids.