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. 2007 Jan 12;73(7):2207–2217. doi: 10.1128/AEM.01599-06

TABLE 3.

CGH results for selected genes related to transport and utilization of sugars and API 50 CH test results for selected carbohydrates

Carbohydrate(s) ORF (gene) Result for strain:
V583,a APIb NCDO 581
NCDO 642
EF BRIDGE
JH2-SS
V24
OG1RF
INY3000
138Vet
179Vet
CGHc API CGH API CGH API CGH API CGH API CGH API CGH API CGH API CGH API
Arabinose EF1131 (araD) Neg + Pos ND Neg ND Pos + Neg + Pos − Neg − Neg − Neg ND Neg
Cellobiose EF1159 Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos
EF1160 + + + + + + + + +
Fructose EF0694 Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos
EF0717 + + + + + + + + +
EF1167 (fba) + + + + + + + + +
EF1504 + + + + + + + + +
Lactose and galactose EF1834 (lacB) Pos − Pos − Pos − Pos − Pos + Pos + Pos + Pos − Pos − Pos
EF1835 (lacA) − − − − + + + ND −
Glucose EF1416 (pgi) Pos + Pos + Pos + Pos + Pos + Pos − Pos − Pos − Pos ND Pos
EF1129 + + ND − ND − − − ND
Glycerol EF1928 Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos
EF1929 (glpK) + + + + + + + + +
Maltose EF0954-EF0958 Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos
Mannitol EF0411-EF0413 Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos
Mannose EF0020 Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos
EF0021 + + ND − ND − − − −
EF0022 + + + + + + + + +
EF2589 (manA) + + + + + + + + +
N-Acetylglucosamine EF0451 Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos
EF0466 (nagB) + + + + + + + + +
EF3044 (nagA2) − − − − − − − − −
Rhamnose EF0433 Neg + Pos + Pos + Neg + Neg + Neg + Neg + Neg + Neg + Pos
EF0434 (rhaA) + + + + + + + + +
EF0435 (rhaD) + + + + + + + + +
EF1243 + + + + + + + + +
Ribose EF0197 (rpiA) Pos + Pos + Pos + Pos + Pos + Pos − Pos − Pos + Pos + Pos
EF1922 + + + + + + + + +
EF2959 + + + + + + + + +
EF2960 (rbsD) + + + + + + + + +
EF2961 (rbsK) + + + + + + + + +
Sucrose EF1603 (scrB1) Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos
EF1746 (galU) + + + + + + + + +
EFA0069 (scrB2) − − − − − − − − −
Trehalose EF0955 (galM) Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos + Pos
EF0956 (pgmB) + + + + + + + + +
EF1068 (galM) + + + + + + + + +
EF2788 (glcK) + + + + + + + + +
Xylose EF0556 (xylA) Neg − Neg − Neg − Neg − Neg − Neg − Neg − Neg + Neg − Neg
a

Only API 50 CH results are shown for V583 since all of the genes, by definition, were present in this strain.

b

Fermentation of carbohydrates in the carbohydrate medium was indicated by a yellow color. Pos indicates fermentation, and Neg indicates no reaction, no color change.

c

+, gene present; −, gene divergent; ND, gene unclassified.