TABLE 1.
Intergenic regions predicted to be directly bound by σF, σC, and σK using a single-array error model (P ≤ 0.001)a
| σ factor | Regionb |
|---|---|
| σF | Rv0213c-fadD4 |
| ppe7-ppe8 | |
| ctpH-Rv0424c | |
| hbhA-Rv0476 | |
| Rv0547c-Rv0546c | |
| Rv0760c-Rv0759c | |
| moaD2-rpfA | |
| Rv1054-Rv1053c | |
| pks4-papA3 | |
| pe_pgrs25-Rv1397c | |
| pe_pgrs27-tkt | |
| gnd1-guaB1 | |
| Rv1870c-Rv1869c | |
| Rv1871c-Rv1870c | |
| furA-katG | |
| Rv2023Ac-Rv2023c | |
| dapE2-tb18.6 | |
| Rv2576c-Rv2577 | |
| ribD-Rv2672 | |
| pyrH-Rv2884 | |
| nrdH-nrdI | |
| Rv3210c-rhlE | |
| Rv3253c-Rv3254 | |
| usfY-usfX | |
| glpD2-phoY1 | |
| Rv3605c-Rv3604c | |
| proX-Rv3760 | |
| σC | Rv0095c-ppe1 |
| ctpB-Rv0104 | |
| Rv0311-Rv0312 | |
| Rv0330c-Rv0331 | |
| ansP2-Rv0347 | |
| grcC1-htpX | |
| Rv0575c-Rv0574c | |
| secE1-nusG | |
| rplJ-rplL | |
| Rv0680c-Rv0681 | |
| rplW-rplB | |
| rpsQ-atsA | |
| rplO-sppA | |
| mbtI-Rv2387 | |
| Rv3483c-Rv3482c | |
| σK | gmhA-gmhB |
| Rv0245-Rv0246 | |
| Rv0281-Rv0282 | |
| Rv0699-rpsJ | |
| rplW-rplB | |
| Rv1069c-pe_pgrs20 | |
| Rv1115-Rv1116 | |
| rrl-rrf | |
| Rv1501-Rv1502 | |
| Rv1534-Rv1535 | |
| Rv2106-pe22 | |
| Rv2872-mpt83 | |
| dipZ-mpt70 | |
| mpt70-Rv2876 | |
| Rv3889c-Rv3888c | |
| Rv3920c-gid |
a
The single-array error model used has been described previously (34).
b
The gene annotations are from Tuberculist (http://genolist.pasteur.fr/TubercuList/).