TABLE 5.

Genomic islands of APEC O1

Island no.	Start (bp)	Stop (bp)	Description	Size (bp)	Presence in strain:
					K-12 MG1655	CFT073	UTI89	536
1	271626	243408	PAI IIAPEC O1 near tRNA-Asp	28,218	−	−	+	+
2	314347	295179	PAI IIIAPEC O1 near tRNA-Thr; contains vat	19,168	−	+	+	+
3	328228	339123	ExPEC island	10,895	−	+	+	+
4	347107	353093	ExPEC island	5,986	−	+	+	+
5	370099	375196	ExPEC island	5,097	−	+	+	−
6	682227	691198	ExPEC island	8,971	−	+	+	+
7	888045	897875	ExPEC island	9,830	−	−	+	−
8	919803	958265	Prophage	38,462	−	−	−	−
9	1182688	1221584	Prophage	38,896	−	+	+	−
10	1224376	1229282	ExPEC island containing sitABCD operon	4,906	−	+	+	+
11	1336568	1377916	Prophage	41,348	Partial	Partial	+	−
12	1414877	1421687	ExPEC island	6,810	−	+	+	+
13	1470904	1515743	Prophage	44,839	Partial	−	−	−
14	1515743	1522998	ExPEC island containing cdt locus	7,255	−	−	−	−
15	2054786	2080866	Prophage	26,080	−	Partial	Partial	Partial
16	2080867	2168373	PAI IVAPEC O1 near tRNA-Asn; contains yersiniabactin operon	87,506	−	+	+	+
17	2281456	2255598	Prophage	25,858	−	−	−	−
18	2554458	2560406	ExPEC island	5,948	−	+	+	+
19	2608989	2570656	Prophage	38,333	−	−	Partial	−
20	2777929	2738458	Prophage	39,471	−	−	−	−
21	2879008	2888332	ExPEC island near tRNA-Arg	9,324	−	−	+	−
22	2947835	2914107	Prophage	33,728	−	−	+	−
23	2950455	2957275	ExPEC island	6,820	−	−	+	−
24	3154123	3116205	ExPEC island near tRNA-Met	37,918	−	Partial	+	Partial
25	3387657	3304326	PAI IAPEC O1 near tRNA-Phe; contains ireA, tia, pap operon	83,331	−	Partial	Partial	Partial
26	3404606	3413814	ExPEC island	9,208	−	+	+	+
27	3443933	3450091	ExPEC island	6,158	−	+	+	+
28	3461178	3471122	ExPEC island	9,944	−	+	+	+
29	3688691	3696219	ExPEC island	7,528	−	+	+	+
30	3857622	3848199	ExPEC island containing auf fimbrial operon	9,423	−	+	+	+
31	3893727	3897975	ExPEC GimB island	4,248	−	−	−	+
32	3944861	3953813	ExPEC island containing chu locus	8,952	−	+	+	+
33	4089354	4098487	Lipopolysaccharide core synthesis region	9,133	−	+	+	+
34	4122439	4135802	ExPEC island	13,363	−	+	+	+
35	4311724	4334676	ExPEC island	22,952	−	+	+	+
36	4377338	4385895	ExPEC island	8,557	−	+	+	+
37	4548317	4553013	ExPEC island	4,696	−	+	+	+
38	4591752	4607443	ExPEC island	15,691	−	+	+	+
39	4636683	4642553	ExPEC island	5,870	−	+	+	+
40	4769233	4711722	Ethanolamine utilization island near tRNA-Phe	57,511	−	+	−	−
41	4833450	4842949	ExPEC island	9,499	−	+	+	+
42	4955192	4931724	ExPEC island containing ibeA	23,468	−	−	+	−
43	5047045	5002685	Prophage	44,360	−	−	+	−