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. Author manuscript; available in PMC: 2007 May 2.
Published in final edited form as: Mol Cell Proteomics. 2006 Dec 23;6(3):548–564. doi: 10.1074/mcp.D600007-MCP200

Table 3.

Fifty most abundant megakaryocyte transmembrane proteins. Each of the 53,046 sequence tags in the mouse megakaryocyte LongSAGE library were identified by comparison to a reference sequence database (SAGEmap tag ug-rel.zip) from SAGEmap at the NCBI website. Genes with predicted transmembrane domains (TMDs) were identified using TMHMM version 2.0 (25).

NCBI accession number Gene symbol Protein name TMDs SAGE tags
NM_010575 Itga2b αIIb integrin subunit 1 136
NM_008410 Itm2b Integral membrane protein 2B 1 128
NM_029478 Tmem49 Transmembrane protein 49 6 116
NM_018882 Gpr56 G protein-coupled receptor 56 7 79
NM_007653 Cd63 CD63 4 71
NM_012032 Serinc3 Tumor differentially expressed 1 11 65
NM_001001892 H2-K1 MHC Class I 1 63
NM_175015 Atp5g3 Mitochondrial H+transporter 2 57
NM_009941 Cox4i1 Cytochrome c oxidase subunit IV 1 55
AF201457 Clec-2 C-type lectin-like receptor 2 1 51
NM_007750 Cox8a Cytochrome c oxidase VIIIa 1 47
NM_008397 Itga6 α6 integrin subunit 1 47
NM_025650 Uqcr Ubiquinol-cytochrome c reductase 1 45
NM_026432 Tmem66 Transmembrane protein 66 2 44
NM_133668 Slc25a3 Solute carrier family 25 member 3 2 43
NM_010686 Laptm5 Lysosomal-associated TM5 4 42
NM_011216 Ptpro Protein tyrosine phosphatase RO 1 41
NM_026617 Tmbim4 Transmembrane BAX inhibitor 6 41
NM_026124 1110008 F13Rik RAB5-interacting protein 3 37
NM_019699 Fads2 Fatty acid desaturase 2 1 37
NM_020258 Slc37a2 Solute carrier family 37 member 2 1 37
NM_009128 Scd2 Stearoyl-Coenzyme A desaturase 2 4 36
NM_007657 Cd9 CD9 4 34
NM_009663 Alox5ap 5-lipoxygenase-activating protein 3 33
NM_010581 Cd47 CD47 5 33
NM_053272 Dhcr24 24-dehydrocholesterol reductase 1 32
NM_015747 Slc20a1 Solute carrier family 20 member 1 8 32
NM_028608 Glipr1 GLI pathogenesis-related 1 1 31
NM_010327 Gp1bb GPIbβ 1 31
NM_016741 Scarb1 Scavenger receptor class B1 2 31
NM_025378 Ifitm3 Interferon-induced TM protein 3 2 30
NM_025509 2310008 M10Rik DC2 protein 3 29
NM_026155 Ssr3 Signal sequence receptor γ 4 29
NM_013532 Lilrb4 gp49B 1 28
NM_016906 Sec61a1 Sec61α1 subunit 10 28
NM_009775 Bzrp Peripheral benzodiazepine receptor 5 27
NM_007806 Cyba Cytochrome b-245α 3 27
NM_009768 Bsg Basigin 1 26
NM_030694 Ifitm2 Interferon-induced TM protein 2 2 25
NM_008562 Mcl1 Myeloid cell leukemia sequence 1 1 24
NM_133933 Rpn1 Ribophorin I 1 24
NM_025468 Sec11l3 Sec11-like 3 1 24
NM_010185 Fcer1g Fc receptor γ 1 23
NM_008147 Gp49a gp49A 1 22
NM_010326 Gp1ba GPIbα 1 21
NM_008640 Laptm4a Lysosomal-associated TM4A 4 21
NM_022995 Tmepai Nedd4 WW binding protein 4 1 21
NM_026820 Ifitm1 Interferon-induced TM protein 1 2 20
NM_009842 Cd151 CD151 4 19
AK035304 P2rx1 P2X1 ATP receptor 2 19
HHS Vulnerability Disclosure