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. 2007 Jan 5;92(6):2120–2130. doi: 10.1529/biophysj.106.096016

FIGURE 6.

FIGURE 6

Best predicted orientation of cis-verbenol (shown with its vdw surface area) in the redesigned binding pocket of AraC from two different angles. Hydrogen bonds are shown with green lines; cis-verbenol is predicted to stack against the indole ring of Trp95 and networks of hydrogen bonds, and vdw interactions are responsible for placing the ligand in the binding pocket.