TABLE 1.
Computational design
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Design position | Wild-type residue | Binding of cis-verbenol (case study 1) | Binding of cis-verbenol but not α-pinene (case study 2) | Binding of cis-verbenol but not verbenone (case study 3) |
7 | Asp | WT* | WT | WT |
15 | Phe | Gly, Gln, His | Gly, His, Thr | Gly, Gln, His |
17 | Ala | Gln, Arg | Asn, Arg | Gln, Arg |
20 | Val | Arg, Thr, His | Trp, Gln | Tyr, Arg, Thr |
23 | Leu | Gln, Glu, Lys | Trp, Gln, Lys | Phe, Gln, Glu, Lys |
24 | Thr | Val, Asn, Gln | WT | His, Gln, Glu |
32 | Leu | Tyr, Asn, Arg | Gln, His, Phe | Ala, Ser, Tyr, Asn, Arg |
34 | Phe | Met, Glu, His | Tyr, Gln, Arg, His | Arg, Glu, Gln, His |
35 | Phe | WT | WT | WT |
36 | Ile | Thr, Asn | Asn | Asn, Asp |
37 | Asp | Val, Lys, Arg | Lys, Arg | Val, Lys, Arg |
38 | Arg | Ala, His, Trp | Ala, His | His, Ala, Trp |
48 | Asn | WT | WT | WT |
80 | His | WT | WT | WT |
82 | Tyr | Ala, Phe | WT | Gly, Ala, Phe |
91 | Trp | Gly, Ala, His | Phe, Arg, His | Ala, Gly, His |
WT refers to wild-type AraC.