TABLE 2.
Bacterial species/phylotypes found in the oral cavities of subjects with VAP
| Species or phylotypea |
|---|
| Abiotrophia defectiva |
| Acinetobacter baumannii |
| Actinomyces lingnae |
| Actinomyces odontolyticus |
| Actinomyces radingae |
| Aerococcus christensenii |
| Anaerococcus lactolyticus D14154 |
| Anaerococcus tetradius AF542234 |
| Atopobium parvulum |
| Atopobium rimae |
| Bacteroidessp. clone CMC966 |
| β-Proteobacteriumsp. clone CMC756 |
| β-Proteobacterium vaginal clone rRNA373 |
| Campylobacter concisus |
| Campylobacter gracilis |
| Campylobacter showae |
| Capnocytophaga sp. clone BM058 |
| Capnocytophaga sputigena |
| Catonella clone EZ006 |
| Catonella morbi |
| Catonella sp. clone IS018B32 (cystic fibrosis) |
| Catonella sp. clone EZ006 |
| Catonella sp. oral clone BR063 |
| Clostridium celerecrescens AY458859 |
| Corynebacterium asperum/xerosis/amycolatum |
| Dialister clone rRNA287 |
| Dialister invisus |
| Dialister invisus |
| Dialister pneumosintes |
| Dialister sp. AF473837 |
| Dialistersp. clone CMC407 |
| Dialister vaginal clone rRNA287 AY959060 |
| Dialister vaginal clone rRNA387 AY959160 |
| Enterbacteraceaesp. oral clone CMC261 |
| Enterococcus faecalis |
| Escherichiasp. clone CMC357 |
| Eubacterium infirmum |
| Eubacterium saphenum |
| Eubacterium sp. clone BP2-88 |
| Eubacterium sp. clone DO016 |
| Eubacterium sp. clone EH006 |
| Eubacterium sp. clone JN088 |
| Eubacteriumsp. oral clone CMC125 |
| Eubacterium sp. oral clone JN088 |
| Eubacterium strain MDA2477 |
| Finegoldia magna |
| Firmicutessp. clone CMC1416 |
| Firmicutes sp. strain FTB41 (Oribacterium sinus) |
| Firmicutes vaginal clone FX93B4-11 AY995273 |
| Firmicutes vaginal clone rRNA115 AY958888 |
| Fusobacterium gonidoformans |
| Fusobacterium nucleatum |
| Gardnerella vaginalis |
| Gemella hemolysans |
| Gemella morbillorum |
| Gemella sanguinis |
| Gemellasp. clone CMC656 |
| Gemellasp. clone CMC663 |
| Gemella strain 1754-94 Y13363 |
| Gemella strain 933-88 |
| Granulicatella adiacens |
| Haemophilus haemolyticus |
| Haemophilus influenzae |
| Haemophilus parainfluenzae |
| Haemophilus segnis |
| Haemophilus sp. oral clone BJ095 |
| Lachnospiraceae genomo sp. clone C1 AY278618 |
| Lachnospiraceae oral clone MCE9_31 E3 AF481220 |
| Lachnospiraceae sp. clone MCE7_60 E1 |
| Lachnospiraceaesp. clone CMC255 |
| Lactobacillus acidophilus |
| Lactobacillus catenaforme |
| Lactobacillus gasseri |
| Lactobacillus kalixensis |
| Lactobacillus oral clone HT070 |
| Megasphaera micronuciformis clone BU057 |
| Megasphaera sp. clone BS073 |
| Megasphaera sp. oral clone CS025 |
| Micromonas micros |
| Mogibacterium timidum |
| Mogibacterium vescum AB021702 |
| Mycoplasma hominis |
| Mycoplasma salivarium |
| Neisseria bacilliformis clone AK105 |
| Neisseria clone AP60-53 AB028405 |
| Neisseria elongata |
| Neisseria flava/perflava |
| Neisseria flavescens |
| Neisseria mucosa |
| Neisseria pharyngis |
| Neisseria sp. clone BL026B07 AY806299 |
| Neisseria subflava/perflava |
| Peptoniphilus asaccharolyticus |
| Peptoniphilus lacrimalis AF542230 |
| Peptostreptococcus anaerobius |
| Peptostreptococcus clone CK035 |
| Peptostreptococcus hydrogenalis D14140 |
| Peptostreptococcus indolicus |
| Peptostreptococcus lactolyticus |
| Peptostreptococcus micros |
| Peptostreptococcus sp. clone CK035 |
| Peptostreptococcus sp. clone GMA-A52 |
| Peptostreptococcus sp. clone HE064 |
| Peptostreptococcus sp. clone IS040B03 |
| Peptostreptococcussp. clone CMC101 |
| Peptostreptococcussp. clone CMC259 |
| Peptostreptococcus sp. oral clone BS044/FL008 |
| Peptostreptococcus sp. oral clone CK035 |
| Peptostreptococcus strain CCUG 42997 |
| Prevotella clone AO009 |
| Prevotella clone GI030 |
| Prevotella clone PUS9.180 AJ012605 |
| Prevotella melaninogenica |
| Prevotella salivae |
| Prevotella sp. BI027 |
| Prevotella sp. clone 4.24k DQ016961 |
| Prevotellasp. clone CMC712 |
| Prevotella sp. clone DO039 |
| Prevotella sp. oral clone AO036 |
| Proteus mirabilis |
| Pseudomonas fluorescens |
| Pseudomonas tolaasii |
| Pseudoramibacter alactolyticus |
| Sedimentibactersp. clone CMC964 |
| Selenomonassp. clone CMC401 |
| Selenomonas sp. clone DM071 |
| Selenomonas sp. oral clone CS015 |
| Selenomonas sputigena |
| Shewanella algae |
| Shuttleworthia satelles |
| Solobacterium moorei |
| Staphylococcus aureus |
| Streptococcus anginosus |
| Streptococcus constellatus |
| Streptococcus cristatus |
| Streptococcus infantis |
| Streptococcus mitis biovar 2 |
| Streptococcus mitis/pneumoniae |
| Streptococcus oralis ATCC 35037 |
| Streptococcus sanguinis |
| Streptococcus sp. clone BW009 |
| Streptococcus sp. clone CH016 |
| Streptococcus sp. clone RP55-19 |
| Streptococcus sp. oral clone BP2-57 AB121930 |
| Streptococcus sp. clone P3 |
| Streptococcus sp. strain 12F |
| Streptococcus sp. strain H6 |
| Terrahaemophilus aromaticivorans |
| Veillonella parvula/dispar |
a
Boldface type indicates a novel phylotype.