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. 2007 Feb 27;81(8):4166–4176. doi: 10.1128/JVI.02069-06

FIG. 1.

FIG. 1.

The 5′ and 3′ ends of the RCP genes. Parts of the genomes of RRV 17577 (GenBank accession no. AF083501) and RRV H26-95 (AF210726) at the 5′ and 3′ ends of the RCP genes are displayed. The predicted RCP start (ATG) and stop (TAA) codons are in boldface and underlined. The detected mRNA start sites, as found by 5′ RACE in the present study, are in boldface, and the number above the nucleotide indicates the number of sequenced clones in which each site was found. For orientation, the number in parentheses indicates the position upstream (−) of the ATG start codon or downstream (+) of the TAA stop codon. The mRNA stop site and location of the poly(A) tail were determined by 3′ RACE. The position in the genome is indicated at the beginning of each sequence. Putative TATA boxes are enclosed by a rectangle, the consensus AATAAA box is underlined with two lines, and putative YGTGTTYY boxes are enclosed in rectangles with dashed lines, where Y stands for pyrimidine. The lack of a G residue in the RCP-H YGTGTTYY box compared to that of RCP-1 is indicated with a minus sign.