TABLE 1.
A comparison of the identity and similarity of CCP domains in RCP-H, RCP-1, and KCP
| Aligned sequencesa | Identity (%) | Similarity (%) | |
|---|---|---|---|
| RCP-H CCP1-4 | RCP-1 CCP5-8 | 64 | 80 |
| RCP-H CCP1-4 | RCP-1 CCP1-4 | 47 | 63 |
| RCP-1 CCP1-4 | RCP-1 CCP5-8 | 45 | 64 |
| RCP-1 CCP1-4 | KCP CCP1-4 | 45 | 63 |
| RCP-1 CCP5-8 | KCP CCP1-4 | 45 | 58 |
| RCP-H CCP1-4 | KCP CCP1-4 | 41 | 58 |
a
The following amino acid residues were used (numbering refers to full-length proteins containing their signal peptide): 27 to 270 for RCP-H CCP1-4 (Q9J2M6); 23 to 265 for RCP-1 CCP1-4 (Q9WRU2); 320 to 562 for RCP-1 CCP5-8 (Q9WRU2); and 25 to 266 for KCP CCP1-4 (P88903). The TrEMBL accession numbers are in parentheses. Alignment was performed at http://www.ncbi.nlm.nih.gov/BLAST/bl2seq/wblast2.cgi, using the BLOSUM62 matrix algorithm.