Table 6.

Genomic Locations with Highest Score Identified by Matrix Search

Chromosome	Motif location		Strand	Score	Index in pattern search
A. NGLC Family (Smin = 24.027a)
20	63883774	63883819	−	29.4595	38
8	29298192	29298237	−	29.4595	20
X	104174415	104174460	−	29.0811	2
8	45473102	45473147	+	29.0541	21
X	13920432	13920477	+	28.8649	1
15	76752787	76752832	−	29.7568	34
17	8070258	8070655	−	28.5135	37
6	98309963	98310008	−	28.4324	19
17	5014080	5014125	−	28.4054	35
17	5277202	5277247	−	28.4054	36
2	237873656	237873701	+	28.3514	7
15	22459117	22459162	+	28.0811	28
1	1478159	1478204	−	28.0541	5
11	125455215	125455260	−	27.973	26
11	125490330	125490375	−	27.973	27
15	76721719	76721764	−	27.8919	33
4	184669254	184669299	−	27.6487	15
2	237886519	237886564	+	27.5946	8
15	76709488	76709533	+	27.5676	32
8	45498199	45498244	−	27.4324	22
X	152454639	152454684	−	27.4324	4
2	178143450	178143495	−	27.3514	6
15	24323276	24323321	+	27.1081	30
15	26565917	26565962	+	27.1081	31
5	183945827	183945872	+	27.0811	18
15	24261884	24261929	+	27.0541	29
5	174399293	174399338	−	26.7027	16
11	2590910	2590955	−	26.5946	25
4	51222053	51222098	−	26.5135	13
10	96875579	96875624	+	26.2432	24
4	50330199	50330244	−	26.2432	11
4	166964539	166964584	+	25.7027	14
5	174946361	174946406	+	25.6757	17
4	50782012	50782057	+	25.5135	12
3	104298897	104298942	−	25.1351	9
4	50085574	50085619	−	24.3243	10
X	152091806	152091851	−	24.027	3
B. CA Family (Smin = 32.6429)
16	77218848	77219708	+	39.2143	15
16	77672109	77672969	+	39.2143	16
4	138352740	138353600	+	39.2143	5
16	23047764	23050079	−	39.0714	12
16	33401499	33403805	−	39.0714	13
16	33986402	33988707	−	39.0714	14
8	89982297	90014490	+	38.8571	8
15	60482427	60485863	+	38.4286	11
9	38809920	38819255	+	37	10
8	89796759	89803951	+	36.9286	6
8	90013921	90014490	+	36.8572	9
17	64513194	64513368	+	36.4286	18
8	89871143	89874524	−	36.4286	7
1	9063801	9065482	+	35.8571	3
17	55604726	55621766	−	35.3571	17
3	68787364	68790131	+	34.5	4
19	57549926	57550194	−	34	19
1	230527143	230527424	−	32.6429	1
1	230570250	230570531	+	32.6429	2

^aS_min is the minimum score of the motifs from known family members.