Table 2.
Data collection and refinement statistics
Lactaldehyde dehydrogenase | Unliganded | NADH-lactate complex | NADPH complex |
---|---|---|---|
Resolution, Å | 50 - 2.2 | 50 - 2.1 | 50 - 2.7 |
Total/unique reflections, > 0 σ(I) | 63,439/32,461 | 67,837/34,320 | 30,815/15,617 |
Completeness, % (overall/outer shell) | 99.0/99.1 | 93.7/92.8 | 89.6/100 |
Rmerge (overall/outer shell)a | 0.117/0.529 | 0.122/0.542 | 0.139/0.416 |
I/σ(I) (overall/outer shell) | 33.6/6.3 | 17.1/3.6 | 22.6/6.9 |
No. of reflections, work/test | 30,866/1,595 | 31,908/2,412 | 14,526/1,091 |
R/Rfreeb | 0.222/0.252 | 0.200/0.234 | 0.212/0.253 |
Protein atomsc | 3,663 | 3,666 | 3,666 |
Water moleculesc | 109 | 221 | 32 |
Ligand atomsc | 0 | 92 | 47 |
Sulfate ionsc | 2 | 2 | 2 |
R.m.s. deviations | |||
Bond lengths, Å | 0.006 | 0.006 | 0.007 |
Bond angles, ° | 1.2 | 1.4 | 1.3 |
Dihedral angles, ° | 22.7 | 22.6 | 22.0 |
Improper dihedral angles, ° | 0.81 | 0.94 | 0.97 |
Mean B values, Å2 | |||
Protein main chain atoms | 31 | 25 | 30 |
Protein side chain atoms | 34 | 28 | 32 |
Solvent | 30 | 27 | 18 |
Sulfate ions | 68 | 61 | 94 |
NAD(P)H | --- | 34 | 46 |
Lactated | --- | 43 | --- |
Ramachandran plot:e number/percentage of residues with backbone conformations | |||
Allowed | 376/91.3 | 374/90.7 | 355/86.1 |
Additionally allowed | 33/ 8.0 | 34/ 8.3 | 49/12.0 |
Generously allowed | 1/ 0.2 | 1/ 0.2 | 5/ 1.2 |
Disallowed | 2/ 0.5 | 3/ 0.7 | 3/ 0.7 |
, where I is the observed intensity and is the average intensity calculated for replicate data.
Crystallographic R factor, , for reflections contained in the working set. Free R factor, , for reflections contained in the test set excluded from refinement (8% of total). and are the observed and calculated structure factor amplitudes, respectively.
Per monomer in the asymmetric unit.
Refined lactate occupancy = 0.52.
Ramachandran plot statistics calculated for nonproline and nonglycine residues using PROCHECK.48