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. Author manuscript; available in PMC: 2008 Feb 16.
Published in final edited form as: J Mol Biol. 2006 Nov 10;366(2):481–493. doi: 10.1016/j.jmb.2006.11.023

Table 2.

Data collection and refinement statistics

Lactaldehyde dehydrogenase Unliganded NADH-lactate complex NADPH complex
Resolution, Å 50 - 2.2 50 - 2.1 50 - 2.7
Total/unique reflections, > 0 σ(I) 63,439/32,461 67,837/34,320 30,815/15,617
Completeness, % (overall/outer shell) 99.0/99.1 93.7/92.8 89.6/100
Rmerge (overall/outer shell)a 0.117/0.529 0.122/0.542 0.139/0.416
I/σ(I) (overall/outer shell) 33.6/6.3 17.1/3.6 22.6/6.9
No. of reflections, work/test 30,866/1,595 31,908/2,412 14,526/1,091
R/Rfreeb 0.222/0.252 0.200/0.234 0.212/0.253
Protein atomsc 3,663 3,666 3,666
Water moleculesc 109 221 32
Ligand atomsc 0 92 47
Sulfate ionsc 2 2 2
R.m.s. deviations
 Bond lengths, Å 0.006 0.006 0.007
 Bond angles, ° 1.2 1.4 1.3
 Dihedral angles, ° 22.7 22.6 22.0
 Improper dihedral angles, ° 0.81 0.94 0.97
Mean B values, Å2
 Protein main chain atoms 31 25 30
 Protein side chain atoms 34 28 32
 Solvent 30 27 18
 Sulfate ions 68 61 94
 NAD(P)H --- 34 46
 Lactated --- 43 ---
Ramachandran plot:e number/percentage of residues with backbone conformations
 Allowed 376/91.3 374/90.7 355/86.1
 Additionally allowed 33/ 8.0 34/ 8.3 49/12.0
 Generously allowed 1/ 0.2 1/ 0.2 5/ 1.2
 Disallowed 2/ 0.5 3/ 0.7 3/ 0.7
a

Rmerge=III, where I is the observed intensity and I is the average intensity calculated for replicate data.

b

Crystallographic R factor, R=(FoFc)Fo, for reflections contained in the working set. Free R factor, Rfree=(FoFc)Fo, for reflections contained in the test set excluded from refinement (8% of total). Fo and Fc are the observed and calculated structure factor amplitudes, respectively.

c

Per monomer in the asymmetric unit.

d

Refined lactate occupancy = 0.52.

e

Ramachandran plot statistics calculated for nonproline and nonglycine residues using PROCHECK.48