Table 1.
Sulfate-bound form | Nt-free | AMPPNP | ADP·MgF3 | |
---|---|---|---|---|
Data collection | ||||
Space group | P21212 | P212121 | P21 | P21 |
Resolution (Å)1 | 50 - 2.9 (3.00 - 2.90) | 50 - 3.0 (3.11 - 3.00) | 50 - 2.6 (2.69 - 2.6) | 50 - 2.2 (2.28 - 2.2) |
Completeness (%)1 | 99.2 (92.5) | 87.0 (57.9) | 89.7 (51.5) | 93.5 (63.0) |
Rmerge 1,2 | 8.8 (58.4) | 7.7 (46.9) | 6.1 (20.6) | 6.8 (29.3) |
I / σ(I) 1 | 21.7 (2.17) | 22.8 (2.56) | 23.3 (4.1) | 30.1 (2.67) |
Refinement | ||||
Unique reflections | 48,037 | 37,494 | 61,012 | 102,202 |
Protein + DNA atoms | 10,815 | 11,484 | 10,969 | 11,214 |
Metal + Solvent atoms | 87 | 23 | 182 | 577 |
R-factor (Rfree) (%)1,3 | 23.7 (29.6) | 23.0 (28.5) | 21.5 (25.7) | 21.0 (24.0) |
Average B-factor (Wilson) (Å2)4 | 55.31 (32.36) | 76.27 (61.35) | 77.04 (46.42) | 56.05 (42.29) |
R.m.s. deviations | ||||
Bonds (Å) | 0.0080 | 0.0080 | 0.0067 | 0.0060 |
Angles (°) | 1.38 | 1.41 | 1.23 | 1.13 |
Values for the highest resolution shell are indicated in parentheses.
, where I(h) is the intensity of reflection h, Σh is the sum over all reflections, and Σi is the sum over i measurements of reflection h.
, where Fo and Fc are the observed and calculated structure factor amplitudes. Rfree is calculated for a randomly chosen 10% of reflections which were not used for structure refinement and R-factor is calculated for the remaining reflections.