Table 3.
NORFs with Homologous Sequences
| NORF ID | Proposed ORF designation | Chromosomal location | Size (aa) | CAI | Transcripts per cell | P value | Accession no. |
|---|---|---|---|---|---|---|---|
| NCL001W | YCL002W-A | Chr III: 110356-110526 | 56 | 0.09 | 0.7 | 1.1 × 10−17 | gi‖2131206 |
| NCR009C | YCR024C-B | Chr III: 162857-162591 | 88 | 0.15 | 29.4 | 1.7 × 10−58 | gi‖283181 |
| NHR002C | YHR007C-A | Chr VIII: 122758-122543 | 71 | 0.12 | N.D. | 4.1 × 10−43 | gi‖4517 |
| NHR014W | YHR050W-A | Chr VIII: 209467-209637 | 56 | 0.12 | 0.9 | 2.9 × 10−34 | gi‖3575 |
| NHR017W | YHR132W-B | Chr VIII: 370055-370343 | 95 | 0.10 | 0.8 | 1.0 × 10−56 | gi‖6862571 |
| NIL001W | YIL002W-A | Chr IX: 350298-350507 | 69 | 0.17 | 1.5 | 2.3 × 10−2 | gi‖3766232 |
| NIL005W | YIL046W-A | Chr IX: 268308-268472 | 54 | 0.10 | 0.9 | 1.5 × 10−8 | gi‖2860888 |
| NKR013C | YKR099C-A | Chr XI: 638722-638531 | 63 | 0.14 | 0.8 | 7.0 × 10−6 | gi‖6322033 |
| NLR036W | YLR154W-B | Chr XII: 455884-456024 | 46 | 0.13 | 1.5 | 2.1 × 10−5 | gi‖4669161 |
| NMR046W | YMR175W-A | Chr XIII: 611313-611507 | 64 | 0.13 | N.D. | 1.3 × 10−37 | gi‖7493896 |
| NNL005C | YNL024C-A | Chr XIV: 586816-586598 | 72 | 0.12 | 3.8 | 8.3 × 10−22 | gi‖12833197 |
| NOR009W | YOR072W-A | Chr XV: 464470-464631 | 53 | 0.10 | N.D. | 5.8 × 0−11 | gi‖7493881 |
| NOR043C | YOR192C-C | Chr XV: 704223-703987 | 78 | 0.16 | 0.6 | 7.2 × 10−27 | gi‖6322129 |
| NPR087W | YPR170W-A | Chr XVI: 883373-883558 | 61 | 0.11 | 5.6 | 5.3 × 10−36 | gi‖7493886 |
A Smith-Waterman search was performed for each NORF against the National Center for Biotechnology Information (NCBI) nonredundant protein database (NR) (October 2001) with a BLOSUM62 weight matrix, a gap opening penalty of 12, and gap extension penalty of 2.
CAI, codon adaptation index.