Table 1.

Linkage results using the Illumina Linkage III SNP Panel and the Affymetrix 10 k Mapping Array.

	Illumina III SNP linkage panel						Affymetrix 10 k mapping array
Chr	Marker	Position (cM)	Build34 bp	NPL	p-value	IC	Marker	Position (cM)	Build34 bp	NPL	p-value	IC
2p25	rs1025053	16.1	8238143	2.53	0.0073	0.89	tsc0041232	5.74	2888794	2.71	0.0047	0.91
2p25	rs1025053	16.1	8238143	2.64	0.0056	0.90	tsc0041232	5.74	2888794	2.43	0.0095	0.91
2p14	rs1000756	89.9	66769368	3.31	0.00090	0.93	tsc1090282	90.58	67905612	3.82	0.00019	0.94
2p14	rs1106577	89.9	67023129	3.26	0.0010	0.93	tsc1090282	90.58	67905612	3.80	0.00021	0.94
2q37	rs1453867	239.2	233120438	2.39	0.010	0.93	tsc0524987	244.44	236010878	2.71	0.0046	0.89
2q37	rs1453867	239.2	233120438	2.38	0.010	0.93	tsc0524987	244.44	236010878	2.68	0.0051	0.89
6q27	rs760909	188.1	170713389	3.46	0.00058	0.86	tsc0050465	185.42	multiple pos.	1.85	0.035	0.81
6q27	rs727619	188.1	170562703	2.79	0.0037	0.88	tsc0050465	185.42	multiple pos.	1.77	0.041	0.81
7p22-21	rs1057558	0	806704	2.62	0.0058	0.89	tsc1592599	31.68	17610703	2.55	0.0070	0.94
7p22-21	rs1127460	0	623105	2.35	0.011	0.89	tsc0925001	31.35	17305065	2.42	0.0096	0.93
7q21	rs1023564	101.1	88453743	2.54	0.0071	0.94	tsc0049271	101.05	89624115	2.77	0.0039	0.94
7q21	rs717474	101.1	88403326	2.54	0.0072	0.94	tsc1240889	99.05	85964828	2.82	0.0035	0.94
10q26	rs1536087	159.6	131394560	2.90	0.0028	0.90	tsc0960887	171.41	132054567	3.25	0.0011	0.88
10q26	rs1536087	159.6	131394560	2.92	0.0027	0.90	tsc0960887	171.41	132054567	3.03	0.0020	0.87
11q23	rs617847	126.1	120940295	2.65	0.0054	0.90	tsc0053512	125.27	121196164	2.82	0.0035	0.92
11q23	rs575030	125.1	120630050	2.57	0.0066	0.91	tsc0051264	125.15	121112747	2.51	0.0076	0.92
Xp22	rs225031	39.7	28452585	2.34	0.011	0.93	tsc0038428	42.78	25961925	2.55	0.0071	0.97
Xp22	rs795489	34.4	23062119	2.89	0.0030	0.88	tsc0038428	42.78	25961925	2.68	0.0053	0.94

^aPeak loci p < 0.01 for all loci (bold) and loci r² < 0.40 (not bold)¹