Table 2.
CDKN2A
|
MLH1
|
MGMT
|
ACTB
|
COL2A1
|
|||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Mean of SD | Range | Mean of SD | Range | Mean of SD | Range | Mean of SD* | Range | Mean of SD* | Range | ||
Case 1 | SD(B) | 0.41 | 0.21–0.67 | 0.39 | 0.24–0.82 | 0.26 | 0.20–0.37 | ||||
SD(M) | 0.96 | 0.58–1.1 | 0.45 | 0.14–0.93 | 0.19 | 0.095–0.44 | |||||
Case 2 | SD(B) | 0.39 | 0.36–0.45 | 0.48 | 0.31–0.75 | 0.40 | 0.20–0.54 | 0.33 | 0.19–0.46 | ||
SD(M) | 0.12 | 0.093–0.17 | 0.56 | 0.37–0.86 | 0.61 | 0.44–0.78 | 0.27 | 0.15–0.48 | |||
Case 3 | SD(B) | 0.51 | 0.40–0.65 | 0.21 | 0.10–0.31 | 0.53 | 0.39–0.76 | 0.19 | 0.14–0.32 | ||
SD(M) | 0.51 | 0.36–0.67 | 0.17 | 0.076–0.29 | 0.50 | 0.27–0.74 | 0.19 | 0.13–0.21 | |||
Case 4 | SD(B) | 0.35 | 0.34–0.36 | 0.38 | 0.23–0.62 | 0.33 | 0.14–0.55 | 0.18 | 0.15–0.22 | ||
SD(M) | 0.17 | 0.089–0.31 | 0.48 | 0.23–0.97 | 0.46 | 0.28–0.67 | 0.16 | 0.052–0.26 |
Paired t-test, P = 0.0004.
Blanks indicate negativity for methylation in a particular case-marker combination.
Abbreviations: SD(B), bisulfite-to-bisulfite SD within each run; SD(M), run-to-run SD within each bisulfite-treated sample.