Table 1.
Mamu-DRB haplotypes defined by exon 2 sequencing and D6S2878 genotyping
| Hap | First DRB locus | STR | Second DRB locus | STR | Third DRB locus | STR | Fourth DRB locus | STR | Fifth DRB locus | STR | Sixth DRB locus | STR |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1a | DRB1*0406 | 205, 207, 211 | DRB5*0301 | 169 | ||||||||
| 1b | DRB1*0411 | 223 | DRB5*0304 | 153 | ||||||||
| 2 | DRB3*0403 | 192 | DRB*W305 | 227 | ||||||||
| 3† | DRB1*0412 | 199 | DRB*W3701 | 235 | ||||||||
| 4† | DRB1*1010 | 205 | DRB6*0121 | 216 | ||||||||
| 5† | DRB3*0408 | 203 | DRB*W404 | 293 | ||||||||
| 6† | DRB3*0411 | 190 | DRB*W314 | 219 | ||||||||
| 7‡ | DRB4*0102 | 291 | DRB5*0306 | 173 | ||||||||
| 8‡ | DRB1*0321 | 181 | DRB1*0322/3 | 209 | ||||||||
| 9‡ | DRB1*0321 | 181 | DRB1*0322/3 | 209 | DRB1*1003§ | 175? | ||||||
| 10‡ | DRB1*0309 | 229 | DRB*W2507 | 181 | DRB6*0109 | ? | ||||||
| 11a | DRB1*0303 | 195 | DRB1*1007 | 197 | DRB6*0103 | (202–208) | ||||||
| 11b | DRB1*0312 | 195 | DRB1*1007 | 201 | DRB6*0103 | ? | ||||||
| 11c | DRB1*0306 | 226 | DRB1*1007 | 197 | DRB6*0103 | ? | ||||||
| 11d | DRB1*0306 | 226–230 | DRB1*1003 | 199–213 | DRB6*0107 | 182 | ||||||
| 12 | DRB1*0309 | 233–247 | DRB6*0101 | ? | DRB*W201 | 263 (261, 267) | ||||||
| 13 | DRB6*0112 | 214 | DRB*W2501 | 214, 218? | DRB*W2002 | 218 | DRB6*0106? | 205? | ||||
| 14 | DRB6*0114 | 218 | DRB*W303 | 193 | DRB*W401 | 187 | ||||||
| 15a | DRB1*0403 | 229 | DRB6*0107 | 184 | DRB*W501 | ? | DRB6*? | 208 | ||||
| 15b‡ | DRB1*0403 | 229 | DRB6*0107 | 183 | DRB*W502 | ? | DRB6*0120 | 208 | ||||
| 16 | DRB1*0404 | 225 | DRB6*0102 | 164 | DRB*W307 | 195 | DRB*W702 | 188 | ||||
| 17 | DRB1*0701 | 197 | DRB3*0405 | 237 | DRB5*0303 | 169 | DRB6*0123 | 184 | ||||
| 18a† | DRB1*0306 | 214 | DRB1*07032 | 211 | DRB6*0124 | 170 | DRB*W2603 | 177 | DRB6*0120 | ? | ||
| 18b‡ | DRB1*0306 | 214 | DRB1*07033 | 207 | DRB6*0124 | 168 | DRB*W2603 | 177 | DRB6*0120 | 208 | ||
| 19a | DRB1*0318 | 181 | DRB6*0105 | 190, 192 | DRB*W604 | 201, 205 | DRB*W603 | 275, 277 | DRB6*0104 (+ALU) | 222 (220) | ||
| 19b | DRB1*0318 | 181 | DRB6*0105 | 194 | DRB*W604 | 197 | DRB*W611 | 275 | DRB6*01? | 222 | ||
| 20† | DRB3*0403 | 182 | DRB*W402 | 185 | DRB*W2701 | 227 | DRB6*0116 | 206 | DRB6*0107 | 182 | ||
| 21a | DRB6*0111 | 178 | DRB*W606 | 211, 213, 197 | DRB*W2104 | 211, 213 | DRB*W2603 | 177, 187 | DRB6*0122 | 236 | ||
| 21b‡ | DRB6*0108 | 176 | DRB*W606 | 213 | DRB*W2104 | 213 | DRB*W2604 | 177 | DRB6*0122 | 232 | ||
| 22 | DRB1*0310 | 241 | DRB6*0118 | 210 | DRB*W101 | 219, 223 | DRB*W602 | 279 (285) | DRB*W609 | 219 (223) | DRB6*0106 | 192 |
Data in parentheses are STR length observed in some (one to three) animals. Question marks indicate STRs not detected or rarely detected but presence of gene ascertained by sequencing. “205?” and “175?” indicate STRs detected but not confirmed by sequencing. Hap, haplotype.
†Animals with Chinese origin.
‡Animals with Burmese origin.
§DRB1*1003 belong to haplotypes 8 or 9.