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. Author manuscript; available in PMC: 2007 May 16.
Published in final edited form as: Am J Physiol Cell Physiol. 2005 Jan 12;288(6):C1279–C1286. doi: 10.1152/ajpcell.00463.2004

Table 1. Sense and antisense oligonucleotides used to amplify, by PCR, the carboxy-terminus of rat NKα1 (r-NKα1), rat NKα2 (r-NKα2), rat NKα3 (r-NKα3), rat HKα1 (r-HKα1), and rat or mouse HKα2 (r/m-HKα2).

For each sense oligonucleotide, the EcoRI (GAATTC) site used for cloning the insert in pGBKT7 is underlined. For each antisense oligonucleotide, the stop codon is marked with bold characters. The carboxy-terminus of each X+,K+-ATPase family member was defined by amino acid alignment using the PileUp program. The accession number of the DNA sequences used in these experiments are: r-HKα1 = PO9626, r-NKα1 = M14511, r-NKα2 = M14212, r-NKα3 = M14513, r-HKα2 = M90398, m-HKα2 = unpublished observations from our laboratory. The same oligonucleotide pairs were used to amplify the carboxy-terminus of rat and mouse HKα2 (r/m-HKα2.). Abbreviations: R = arginine, N = asparagine.

Forward Reverse From-to (amino acid) Length (amino acids)
r-NKα1 5′-ACGTGAATTCGTCTTCCAGCAGGGAATGAAGAAC-3′ 5′-ACGTCTCGAGCTAGTAGTAGGTTTCCTTCTCCAC-3′ R941/Y1024 84
r-NKα2 5′-ACGTGAATTCGTGTTCCAGCAGGGCATGAAGAAC-3′ 5′-ACGTCTCGAGTCAGTAGTACGTCTCCTTCTCCAC-3′ N939/Y1020 82
r-NKα3 5′-ACGTGAATTCGTCTTCCAGCAGGGCATGAAGAAT-3′ 5′-ACGTCTCGAGTCAATAGTAGGTCTCTTTCTCCAC-3′ N932/Y1013 82
r-HKα1 5′-ACGTGAATTCGCTTTCCAGCAGGGATTCTTCAGG-3′ 5′-ACGTCTCTCAATAGTAGAGTTCCTGGTCCCACCA-3′ N961/Y1033 73
r/m-Kα2 5′-ACGAGGAATTCCATCTTTCAGCAGGGGCTCTTCAG-3′ 5′-ACGTTCTAGATTCAATAATACATGTTCTTATCCC-3′ N953/Y1036 84