Table 2.
Performance and configurations of all the evaluations in the protein/gene name recognition task
| Modules | Closed-1 | Closed-2 | Closed-3 | Open-1 |
| SVM | Surface word, orthographic feature, morphological pattern, trigger word | |||
| GENIA-POS | Refined-BioCreative-POS | Refined-BioCreative-POS | Refined-BioCreative-POS | |
| DHMM1 | Surface word, orthographic feature | |||
| GENIA-POS | Refined-BioCreative-POS | Refined- BioCreative-POS | Refined-BioCreative-POS | |
| DHMM2 | Surface word, orthographic feature, BioCreative-POS | |||
| Ensemble | Majority Voting | |||
| Abbreviation Resolution | Abbreviation Resolution based on the parentheses structure | |||
| Name Refinement | N/A | N/A | YES | N/A |
| Dictionary Matching | Closed Dictionary | Closed Dictionary | Closed Dictionary | Open Dictionary |
| Overall Performance | P79.97 | P80.46 | P82.00 | P75.10 |
| R80.50 | R80.80 | R83.17 | R81.26 | |
| F80.23 | F80.63(+0.40) | F82.58(+2.35) | F78.06(-4.52) | |