Table 3.
Salt dependence of IHF binding to de novo synthetic sites
| Site | ΔVspeca (ml mol−1) | [NaCl] (mM) | ΔGspec (kcal mol−1) | ![]() |
|---|---|---|---|---|
| A.2 | 112 | 100 | −13.6 ± 0.08 | 1.06 |
| 200 | −12.5 ± 0.05 | |||
| 400 | −9.6 ± 0.13 | |||
| A.3 | 131 ± 9.3 | 50 | −13.0 ± 0.25 | 1.05 |
| 100 | −12.3 ± 0.21 | |||
| 200 | −9.8 ± 0.09 | |||
| A.6 | 154 ± 8.0 | 50 | −13.7 ± 0.22 | 1.00 |
| 100 | −13.2 ± 0.19 | |||
| 200 | −11.4 ± 0.15 |
Note: Values of the volume change (ΔVspec) and free energy change for specific binding (ΔGspec) were obtained by global analysis of pressure perturbation curves obtained at varying NaCl concentration using 50 nM IHF and 10 nM DNA oligonucleotide, as described in the text.
aΔVspec was held constant vs. NaCl concentrations for each oligonucleotide as discussed in the text. The value was poorly resolved in the analysis of oligonucleotide A.2, and so was held fixed at the value obtained from analysis of the data at 100 mM NaCl in Table 1.
