Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2007 Mar 1;35(6):1897–1907. doi: 10.1093/nar/gkm087

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© 2007 The Author(s)

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

PMC Copyright notice

Figure 2. — Varying patterns of RNA conservation in the NS1 and HA ORFs. (A) Consensus nucleotide and amino acid (single letter code) sequences of the first 11 codons of the overall NS1 dataset and the A and B lineages are shown along with the codon MPD scores. Residues not conserved at the 95% level are shown by asterisks. Highly conserved triplets (MPD value <0.05) are shown in red. Conserved residues that differ between lineages are highlighted. Underlining denotes the splice donor sequence. (B) Consensus sequences for the C-terminal 27 codons of HA subtypes 1, 3 and 5, encompassing the packaging signal for H1. MPD scores are not shown for clarity but conserved triplets are color-coded red (MPD < 0.05) or blue (MPD < 0.1) and highlighted. Homology between the H5 sequence and conserved nucleotides in H1 or H3 sequences are indicated by lines.