Table 1.
Genomic Deletions in MDS12
| Deletion | Endpointsa | Size (bp) | Descriptionb |
|---|---|---|---|
| MD1 | 263080, 324632 | 61553 | b0246–b0310; includes K-islands Nos. 16–18, CP4-6, eaeH |
| MD2 | 1398351, 1480278 | 81928 | b1336–b1411; includes K-island No. 83, Rac |
| MD3 | 2556711, 2563500 | 6790 | b2441–b2450; includes K-island No. 128, CP-Eut |
| MD4 | 2754180, 2789270 | 35091 | b2622–b2660; includes K-island No. 137, CP4-57, ileY |
| MD5 | 2064327, 2078613 | 14287 | b1994–b2008; includes K-islands Nos. 94–96, CP4-44 |
| MD6 | 3451565, 3467490 | 15926 | b3323–b3338; includes K-islands Nos. 164 and 165 |
| MD7 | 2464565, 2474198 | 9634 | b2349–b2363; includes K-island No. 121 |
| MD8 | 1625542, 1650785 | 25244 | b1539–b1579; includes K-island No. 77, Qln |
| MD9 | 4494243, 4547279 | 53037 | b4271–b4320; includes K-island No. 225, tec operon, fim operon |
| MD10 | 3108697, 3134392 | 25696 | b2968–b2987; includes K-island No. 153, gic operon |
| MD11 | 1196360, 1222299 | 25940 | b1137–b1172; includes K-island No. 71, e14 |
| MD12 | 564278, 585331 | 21054 | b0538–b0565; includes K-island No. 37, DLP12 |
a
Endpoints indicate the first and last nucleotides in the genome of MG1655 that were removed in each deletion.
b
Descriptions of the deletions include the span of genes deleted (indicated by b-number; Blattner et al. 1997), the MG1655-specific regions (K-islands; Perna et al. 2001), and specific elements such as genes, operons, and cryptic prophages.