Table 2.
Overall Statistics of RP Processed Pseudogenes
| Ave. relative sequence lengtha | Ave. a.a.identityb | Ave. nt.identityc | Ave.disablementsd | Ave. 5′ truncatione | Ave. 3′ truncationf | |
|---|---|---|---|---|---|---|
| Processed pseudogenes | 96.5% | 76.2% | 86.8% | 3.6 | 13 | 8 |
| Pseudogenic fragments | 42.1% | 74.2% | 84.1% | 2.0 | 227 | 127 |
| Total | 88.5% | 75.9% | 84.8% | 3.4 | 44 | 26 |
a
Length of translated pseudogenes divided by the length of RP peptides, averaged over the entire pseudogene population.
b
Average sequence identity between translated pseudogene and RP peptide sequence.
c
Average sequence identity between pseudogene sequence and RP cDNA sequence.
d
Average number of premature stop codons, frame shifts, and repeat insertions in the processed pseudogenes.
e
Average number of missing nucleotides at 5′ end, CDS only.
f
Average number of missing nucleotides at 3′ end, CDS only.