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. 2002 Nov;12(11):1716–1722. doi: 10.1101/gr.188302

Table 1.

PAX6-Binding Sequences in the Human Genome

Name sc-DNA library Sequence (5′–3′) Homology to SINE Location Binding specificity Binding affinityb
GCα1BLs5a MboI TTAGTTCCAGGTCAG Rodent B1 Intron 6 of GCα1 PAX6 0.60
Tsp11Bs Tsp509I AATTAGCCAGGCATGGTAGCACA Primate Alu Multiple PAX6 0.56
Mse180B1s MseI TACAAGCTTCCGCATGAATGGTGCTGGT None Intron 6 of Cyp39A1 PD6 0.65
Tsp2As1 Tsp509I GGCCAGTCACGCGTGTAATT None AL157938 PAX6 1.5
a

Data from Zhou et al. (2000). 

b

Binding affinity to PAX6 relative to CD19-2(A).