Table 1B.
Co-occurrence of Novel cis-Regulatory Motifs
| Motif1* | Motif2* | P-value |
|---|---|---|
| PAC | mRRPE | 3.7E-38** |
| PAC | mRRSE3 | 7.7E-32** |
| mCDE22 | mPTE18 | 8.5E-27** |
| mMERE8 | mMERE4 | 4.2E-23** |
| mGCE11 | mPTE18 | 2.6E-21** |
| mMERE8 | mRLFIBE12 | 5.1E-21** |
| mRLFIBE12 | mCDE22 | 6.0E-20** |
| mPOE3 | OAF1 | 1.2E-19** |
| mOTFE10 | mNSME29 | 4.2E-19** |
| mMERE8 | mITE11 | 2.2E-18** |
| mRRPE | mRRSE3 | 2.6E-11** |
| PAC | mRRSE10 | 8.5E-08** |
*
Names of motifs begin with ‘m’ to indicate that they were derived by running AlignACE (Hughes et al. 2000) on the genes from the following functional categories in the MIPS database: mRRPE, rRNA processing element; mRRSE, rRNA synthesis element; mCDE, cell death element; mPTE, phosphate transport element; mRLFIBE, regulation of lipid fatty acid and isoprenoid biosynthesis element; mPOE, peroxisomal organization element; mOTFE, other transport facilitators element; mNSME, nitrogen and sulfur metabolism element; mITE, ion transporters element.
**
Pairs having P-value < 7.9E-07 (i.e., 0.05/63190), a corrected P-value that may be taken if a false positive rate of 0.05 is assumed.