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. 2002 Nov;12(11):1679–1686. doi: 10.1101/gr.287302

Table 1.

Proportion of Neighboring Nucleotides

Position (bp)a 5′ side 3′ side Both sides




A (%) C (%) G (%) T (%) A (%) C (%) G (%) T (%) A (%) C (%) G (%) T (%)












 1 30.98 25.35 18.76 24.92 25.11 18.85 25.51 30.53 28.04 22.10 22.13 27.72
 2 28.51 23.05 20.29 28.15 28.33 20.24 22.97 28.46 28.42 21.65 21.63 28.30
 3 29.39 21.14 19.99 29.48 29.62 20.03 21.04 29.30 29.51 20.58 20.52 29.39
 4 29.94 21.22 20.39 28.45 28.64 20.39 21.20 29.77 29.29 20.81 20.79 29.11
 5 29.64 20.91 20.71 28.75 28.92 20.70 20.80 29.57 29.28 20.80 20.76 29.16
 6 29.33 20.53 21.44 28.70 28.87 21.40 20.56 29.17 29.10 20.96 21.00 28.94
 7 29.66 20.14 20.92 29.28 29.38 20.98 20.16 29.48 29.52 20.56 20.54 29.38
 8 29.77 20.43 21.07 28.73 28.97 21.03 20.41 29.59 29.37 20.73 20.74 29.16
 9 29.16 20.82 20.79 29.23 29.36 20.81 20.79 29.04 29.26 20.82 20.79 29.14
10 29.06 20.73 20.95 29.26 29.41 20.94 20.69 28.95 29.24 20.84 20.82 29.11
11–20 29.36 20.70 20.84 29.10 29.31 20.83 20.66 29.20 29.34 20.77 20.75 29.15
21–50 29.20 20.92 20.82 29.06 29.25 20.83 20.88 29.05 29.21 20.89 20.86 29.04
51–100 29.32 20.69 20.73 29.26 29.39 20.78 20.66 29.17 29.32 20.76 20.72 29.19
101–200 29.41 20.65 20.65 29.30 29.41 20.71 20.64 29.24 29.32 20.76 20.73 29.18
201–300 29.61 20.37 20.38 29.63 29.68 20.52 20.44 29.36 29.48 20.63 20.60 29.29
Genomeb 29.55 20.44 20.46 29.54 29.55 20.44 20.46 29.54 29.55 20.44 20.46 29.54
a

Position relative to the polymorphic site. For positions farther than 10 bp, the average proportion of each nucleotide in the range is shown. 

b

The average proportion of four nucleotides in the human genome based on NCBI Human RefSeq.