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. 2002 Dec;12(12):1805–1814. doi: 10.1101/gr.631202

Table 2.

Average FST as a Function of SNP Category

Category No. Average FST SE Significance of difference in average FSTa





Coding Intronic


Coding 238 0.107 0.008
Intronic 5,455 0.118 0.002 0.094
Noncoding 13,615 0.123 0.001 0.024 0.008
a

Empirical P values were determined by randomly permuting FST values between SNP categories 10,000 times and then counting the number of permutations with difference in average FST equal to or greater than the original difference.